- Probe CUST_22526_PI390587928
- Source Contig U35_29457
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22526_PI390587928 | Hv_44K_v2 | GATGCCGCAAGAGTAGGTTTTCGTCTCTTCCAGTTGTTGAGGCATAATGGACCTTGTTAA | 347 | GeneList: mediumpurple3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.337 | 1.972 | 1.236 | 0.735 | 0.901 | 0.802 |
| Raw | 18.191 | 22.022 | 12.543 | 10.883 | 3.450 | 3.372 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_37210.1 | 2305 | 2e-24 | 124 - 183 | 100 | 60 / 60 | minus | None |
| Harvest21 | ABC28745 | 443 | 3e-25 | 348 - 407 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29457 | 443 | 3e-25 | 348 - 407 | 100 | 60 / 60 | plus |
Contig Sequence (443 bp)
>U35_29457 443 Hv_44K_v2 TCCTATCTGTGTTGGCAAACTATTGGCGGTACTGAAGTCAAATTAACAAACTCAGCTGCA GCCAGCGACTATCTTTCTCACAGAAAATATCTTGTGATTATCTTGGAAGACACTGTGTAT GTAACTCTTAAGGGTGTCTGGTGCCTGCTGGGCATCGATGGTATTAAGCGTGGACATAGG TGGAACGCCATTTCATCGCTTCTCATGTTAGTCACATGGGAGATGTGGAACGAACGAAAC GTCAGAGTTTTTCCGAAATAAATCGACTATGCCTACTTTACCGATTGACAACATCAAATG GAGGCAAGGAATTGGGCCCTTGTANGGGCGAAACATTTGTGCTCTTTGATGCCGCAAGAG TAGGTTTTCGTCTCTTCCAGTTGTTGAGGCATAATGGACCTTGTTAAACTNTGTTGGCTT TTCCTTTACTTATTAATAAGATG
Homology of Contig U35_29457 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |