- Probe CUST_22524_PI390587928
- Source Contig U35_29459
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22524_PI390587928 | Hv_44K_v2 | TCCAGTTCTGCAACGTCTCCGCGCATGACGACCTCCTTCGACAAGCCAACGGGGCCAACA | 311 | GeneList: lightcyan MasterList: Reassembly_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.357 | 1.298 | 3.055 | 1.892 | 0.464 | 0.627 |
| Raw | 23.578 | 38.872 | 75.277 | 73.548 | 4.765 | 9.423 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_51028.1 | 3413 | 2e-24 | 2722 - 2781 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_51028.2 | 2131 | 2e-24 | 1440 - 1499 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_32561.1 | 2267 | 8e-25 | 1423 - 1482 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28748 | 371 | 3e-25 | 312 - 371 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29459 | 371 | 3e-25 | 312 - 371 | 100 | 60 / 60 | plus |
Contig Sequence (371 bp)
>U35_29459 371 Hv_44K_v2 CGCGAGGGACATGACGTTCGAGAACACGGCGGGGCCGGCCAAGCACCAGGCGGTGGCGCT GCGTTGCGACTCAGACCTCTCCGTCTTCTACCGGTGCGCCTTCGAGGGGCACCAGGACAC GCTGTACGCGCACTCGCTCCGCCAGTTCTACCGCGACTGCCGCGTCGCCGGCACCGTCGA CTTCGTCTTCGGCAACGCCGCCGCCGTGTTCCAGAACTGCCTCCTCCTCGCCCGCGCCCC GCTGCCCGGCCAGAAGAACTCCGTCACGGCCCAGGGCCGCTTCAACGCCTCCATGAACTC CGGCTTCCGCTTCCAGTTCTGCAACGTCTCCGCGCATGACGACCTCCTTCGACAAGCCAA CGGGGCCAACA
Homology of Contig U35_29459 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g34900.1 | 558 | 1e-64 | protein|pectinesterase, putative, expressed |
| Brachypodium v1_2 | Bradi3g37340.1 | 544 | 7e-70 | |
| Arabidopsis v10 | None |