barSeed - Barley Seed Development Database

Probe CUST_22517_PI390587928

Source Contig U35_31775

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22517_PI390587928	Hv_44K_v2	TACAAACTTCTTGAGCTCACGCACTATTATTCTAGTGCTAGACAAGCTCCATGGCGGATG	56	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63806.2	575	2e-24	492 - 551	100	60 / 60	minus	None
MLOC	MLOC_63806.1	1471	2e-24	1311 - 1370	100	60 / 60	minus	ABC19199
JLOC1	JLOC1_41835.2	1742	8e-25	111 - 170	100	60 / 60	plus
JLOC1	JLOC1_41835.1	1753	8e-25	111 - 170	100	60 / 60	plus
Harvest35	U35_31775	597	3e-25	57 - 116	100	60 / 60	plus

Contig Sequence (597 bp)

>U35_31775 597 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGCCACACGGACACGAAGTGTCAAGCTTTGAACTTTGTACA
AACTTCTTGAGCTCACGCACTATTATTCTAGTGCTAGACAAGCTCCATGGCGGATGCGGC
TGCTGCTGCTACTCTAGCTCGTGTGATGGTGCTGCCCTTCCCCGCGCAGGGCCATGTGAT
CCCACTCATGGAGCTGTCTCGCAAGCTCGCCGGACACGGCGTCGAGGTCGACTTCGTGGA
CACCGAGTTCAACCACGACCTCGTCATCGGGTCAATGGCAGAGAAGGGAGCGATTCCTCA
AGGGATACACATGCTCTCTGTTCCGGACGGCCTGGGGCCCGGGGACGACCACGCGGACAT
CGGCAAGTTTGTCAAGGACTTGCCGGCCGCCATGTCCGGCCGCCTCGAGGAGATGATCCG
ATCCAGGAAGATCAACTGGGTGATCGTGGATGTATCCATGAGCTGGGCACTGGAGCTGGC
CACCACGGCGGGTGCCCGTGTTGCCTCCTTCTCGACCTATTCCGCGGCCGTGTTTTCTCT
CAGGATGAACCTCCCCAGATTGATAGAGGATGGTGTGCTCGACGAAAATGGGAATGT

Homology of Contig U35_31775 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55050.1	449	5e-73	protein\|UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed
Brachypodium v1_2	Bradi1g08140.1	455	2e-71
Arabidopsis v10	None