barSeed - Barley Seed Development Database

Probe CUST_22510_PI390587928

Source Contig U35_17485

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22510_PI390587928	Hv_44K_v2	GAAGAAATCTCCGGCGACATTGTGTTTTTTCTTCCCTCCTTTTTGCTTTGCCCGGCTAAA	515	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.151	0.789	2.225	1.999	0.857	0.914
Raw	160.685	1366.308	3252.237	4562.460	697.644	807.364

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_50629.1	1771	1e-23	1434 - 1491	100	58 / 58	plus
Harvest35	U35_17485	589	3e-25	516 - 575	100	60 / 60	plus

Contig Sequence (589 bp)

>U35_17485 589 Hv_44K_v2
GCCGGGACCTCGGCATTCCCAACCTCCTCGTCATCCAGGTTGGGATCGCGACGGGGCAGG
GCAAGTTCGTGGATCTGGTGCGGAAGGCGCAGCGGGCGGTGAGGGCGCCCAACCTCAGGT
ACGTGGACGCCATGGGGCTCCCCGTCGCCAACGACTTCACGCACCTCACCACGCCGGCGC
AGGTCCGGCTAGGCAAGATGCTCGCCGACGCATACGTCGCCACGCTCCACTGATAACTGA
TTCATCATAATCCAGTAACCATCCATGATTACTGACTACCAGTGCGTTTGCCTGCCCGAT
TACTACTAGTAAGCACATCATTCATGCACAGCATTGAAGAATTTGGTGATGATTGGTGGT
GGTGGATGACAGATTAAGTGGCTAATGAAGGAATCTGCTTAGTTAGTCCGTAGCAGCAGC
ATAGACTGTCAGGCTCCCAAAGGTTGAAACTGACTAGATTATTGCTGCCATGATTTATGC
ATTTTATTTTATGTATGGTGCCGAAATGTAAACCGGAAGAAATCTCCGGCGACATTGTGT
TTTTTCTTCCCTCCTTTTTGCTTTGCCCGGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17485 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None