- Probe CUST_22501_PI390587928
- Source Contig U35_43754
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22501_PI390587928 | Hv_44K_v2 | TTCATTCATGTCTGATATAACTAGATCCATGGTGCTGCAGAGGTGACAAGGCGTTCTGCA | 383 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.252 | 0.402 | 1.344 | 1.954 | 1.020 | 1.155 |
| Raw | 3.326 | 11.667 | 37.014 | 79.541 | 15.519 | 19.352 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_21885.1 | 1325 | 7e-23 | 475 - 534 | 98 | 59 / 60 | plus | None |
| Harvest21 | ABC40800 | 461 | 3e-25 | 384 - 443 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43754 | 461 | 3e-25 | 384 - 443 | 100 | 60 / 60 | plus |
Contig Sequence (461 bp)
>U35_43754 461 Hv_44K_v2 CGAAGTCCAGGGTAGCTGAGGAGAGAGCTGAAATTGATTAACTAGCGAGAAGAAAGGCAT ACACTTCATGGCTGGCCTGAGCGTGCTCCTAGAGACCCACGAGGGCAACTCCACCACGCC CAAGATCATCAGCAAGGCCACCCTCCATAGCCCCAAGATCTCCTCCTCATCCCCTTGGTC GCCGGCAGCGAGGCCCGCCGCAAGCACGGGTTCCTTCTTGCAGCGCTGCTTGCTGTGCCA CAAGGATCTAGCCGAGAACAATGACATCTACATGTACAGGTTAGCTGGCTAGGCTGCGCG TGCAGCTGAAACTAGTACTACCTCCTGACTGCTCCTAAGTCCTAATCCATGCACAACCGA TCTACTCCTAGCTACTTTGTCCATTCATTCATGTCTGATATAACTAGATCCATGGTGCTG CAGAGGTGACAAGGCGTTCTGCAGCGTCCAGTGCCGGTGCA
Homology of Contig U35_43754 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |