barSeed - Barley Seed Development Database

Probe CUST_22500_PI390587928

Source Contig U35_29461

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22500_PI390587928	Hv_44K_v2	AAGTACGAGTATTCTACATATGAACAACCTCACATGGCACAGCCCGTTCAGAGCATTCCA	334	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13115.3	1845	2e-24	328 - 387	100	60 / 60	plus	ABC11747
MLOC	MLOC_13115.1	1371	2e-24	329 - 388	100	60 / 60	plus	ABC11747
MLOC	MLOC_13115.2	1849	2e-24	329 - 388	100	60 / 60	plus	ABC11747
JLOC1	JLOC1_8847.2	1871	8e-25	312 - 371	100	60 / 60	plus
JLOC1	JLOC1_8847.1	1896	8e-25	328 - 387	100	60 / 60	plus
Harvest21	ABC28750	406	3e-25	335 - 394	100	60 / 60	plus
Harvest35	U35_29461	406	3e-25	335 - 394	100	60 / 60	plus

Contig Sequence (406 bp)

>U35_29461 406 Hv_44K_v2
CGATCCCCCGCCATTCCCTTCCCCCCACATCGACGAGAACCCTAGCCCCCGAGCTCCTCC
GCCCCCCATCCGCAGCTTCCCTTCCTCCGCCTCCTCCCCCGCCAGCGGACTCGTCGCGAT
CATCTCTCCTCCCAGAGGCGACGGCGCGCCCACGGAGAGGACAAGATTTCAGGGGGTAGT
CCCAGCACTCTTGGGTGCAGTTGTAGCTGCAAAAGGTTGAAGCAAGCCAGTAGAGATGAC
ATCAGAAGGGAATAAAGCTGCTGCGCCTAATGAACCGCTGCCCATTGAGCCACCCGCAAG
CTCTGGCGCAAAGCGTAAGCGTGGTCGCCCAAGGAAGTACGAGTATTCTACATATGAACA
ACCTCACATGGCACAGCCCGTTCAGAGCATTCCACCTCTTCGCAGC

Homology of Contig U35_29461 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None