barSeed - Barley Seed Development Database

Probe CUST_224_PI415269222

Source Contig TA32349_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_224_PI415269222	Hv_44K_v2	ACTAGTAGCCCTGTTACTTCTAGAAATTGAAGAGCAGATGTGTGCAAAACATGCTTTTTT	1440	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.402	2.851	0.940	1.164	0.667	0.505
Raw	140.883	190.639	53.877	103.304	21.999	17.591

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7196.3	1408	2e-24	1302 - 1361	100	60 / 60	plus	ABC03946 ABC19680 ABC44125 ABC48540
Harvest35	U35_15352	1447	3e-25	1344 - 1403	100	60 / 60	plus

Contig Sequence (1512 bp)

>TA32349_4513 1512 Hv_44K_v2
AGCGCCATGGTCCGTGGAGCTGGACCACCATGCACCATCGCCCTCGTGATCCCATCCATC
CATCCCCGGCACCGGCGTCAATCATATATCCACTCCAACTCCAAGCAAGATAAAATATCC
AAACCAACTCAACTCGCTCCAGATCCGTAGCCTTGCACAGACTCGCGCGCAGTCCAGTCC
ACCCACGGCGGCGGCGATCGATGGCGGAGCTCAAGAGCCGGCGGGTGGTCCTCAAGGACT
ACGTGGAGGGCTACCCCACGGAGGCGCACATGGAGCTGCTCCCGGCGGCGCCCGTCGACG
AGGCCGAGGACGGCTCGGTGCTGGTCAAGAACCTCTACCTCTCCTGCGACCCCTACATGC
GCCCCAAGATGTCCCGCCCGCTGCACCAGTCCTACACCGCCGCCTTCGTCCCGGGCGCCC
CCATCACCGGCTACGGCGTGTCCGAGGTCGTCCGGTCCTCGACGCCCGGGGTCGCCGCCG
GCGACCTCGTGTGGGGCATGACCGGCTGGGAGGACTACAGCGTCATCAAGGCCCCCTTCA
CGGCCATGCTCACCAAGATCCAGCCCGACGACGGCGTGCCGCTGTCCTACTACACCGGCG
TCCTCGGCATGCCGGGCCTCACGGCGTACGTGGGGTTCCACCACATCGGCTCCGCGAAGC
CGGGCGACGCGGTGTTCGTCTCGGCGGCCTCCGGCGCCGTCGGCCAGCTCGTCGGCCAGT
TCGCCAGGCTCATGGGCTGCCGCGTCGTCGGCAGCGCCGGGTCCAAGGAGAAGGTGGACC
TGCTCATCAACAAGTTCGGCTTCCACGACGCCTTCAACTACAAGGAGGAGGACGGCGACC
TCGCCGGCGCGCTCAAGAAGCGCTTCCCCGACGGCATCGACGTCTACTTCGAGAACGTCG
GCGGGAAGATGCTCGAGGCCGTGCTGCTCAACATGAAGGTGCACGGCCGCATCGCCGTCT
GCGGCCTCATCTCGCAGTACAACCTCACCGCCGGCGAGAAGGAGGCCGACGTCGGCGTGC
GCAACATGACCTCCCTCGTGGCCAAGCGGGTCCGGATGCAGGGGTTCATCGAGCCCGACC
ACAAGCACCTCTACCCGGAGTACAGGGCGTGGGTGATGCCGCACATCAAGGAGGGCAGGG
TGGTGTACGTCGAGGACGTCGCCGACGGGCTCGAGGCCGCGCCTGGAGCGCTCATCGGCC
TCTTCCATGGCCGCAACGTCGGCAAGCAGGTCGTCAAGCTCACCACCCCCGACACCGAGT
GACTCACAAGATTGTATTAGTAGCAGATCAATTATCAACCGCCTGTCAATCGTCAAGAAT
AAACGAAAGGATCTATTCGCATCGCAATCGCAATCGCAATCGTATTTGGTTGTTGAATGG
GGACGAAAAAGCCAAACATGGTTGTAAAGCCTGTGGGACATCCCGTAACTGTTCGTGCTC
ACTAGTAGCCCTGTTACTTCTAGAAATTGAAGAGCAGATGTGTGCAAAACATGCTTTTTT
TTAGACAACTTT

Homology of Contig TA32349_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g41960.1	346	9e-129	protein\|NADP-dependent oxidoreductase, putative, expressed
Brachypodium v1_2	Bradi4g20620.1	361	0.0
Arabidopsis v10	AT5G16990.1	343	3e-129	Zinc-binding dehydrogenase family protein \| chr5:5581831-5583849 REVERSE LENGTH=343