- Probe CUST_22498_PI390587928
- Source Contig U35_29462
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22498_PI390587928 | Hv_44K_v2 | TTGAAATTTCAGTAACCTGTTCCCATGCCGAAAGTCAGTTCATTGAGCGAGGGTTTGTGG | 262 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.239 | 1.313 | 2.569 | 1.517 | 0.668 | 0.595 |
| Raw | 12.893 | 21.764 | 36.783 | 36.215 | 3.304 | 3.678 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK249213.1 | 1648 | 2e-24 | 518 - 577 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_5943.1 | 1495 | 2e-24 | 446 - 505 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_3860.1 | 1486 | 8e-25 | 466 - 525 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28751 | 513 | 3e-25 | 263 - 322 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29462 | 513 | 3e-25 | 263 - 322 | 100 | 60 / 60 | plus |
Contig Sequence (513 bp)
>U35_29462 513 Hv_44K_v2 CATGAGCGTGCCAGGCCGTCTGTCTTCATTATTCTGCTGACACCGTATGATCAGACGACG ACGAGAGATACCGCTGGCTATGTGGGAACCAAGGATCCGGAGGAGCTCAATGAGATTTTC AAAGCAGAATGTCACACAGAAACGGGTATTGCCGCAAGGAGACGCGGTGACTATTTGTAC ATTGCCACAAGTGCTCACATTATTGACTTCCTTTATCAAGCAAAGACACACCCAATTACA GTAGAAGAAGTGAACAAGCATTTTGAAATTTCAGTAACCTGTTCCCATGCCGAAAGTCAG TTCATTGAGCGAGGGTTTGTGGGAGAGCGGACATACACTCTGGCAGAAGTCTGCGGAATC AACTGTTCCATAGACCTGATGATGGTACGCGTCGATCTCAGAGAGCTGGCCGTCAAGACA GTGGGGGAGCGGCGGAGGATCCCATGCACAGCGAATCACCCACCTGTGCAATTCAGCACC AGCCGCGCCGAGGGTACCCAGTGCATGATGTAC
Homology of Contig U35_29462 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |