- Probe CUST_22495_PI390587928
- Source Contig U35_29464
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22495_PI390587928 | Hv_44K_v2 | AAGGCCTAGCTCAACGCGACAGATCGCTTCCAGTTCTAACACCGGCCGGCGAAAAGAGAT | 264 | GeneList: darkorange2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.256 | 1.118 | 1.380 | 1.047 | 0.511 | 0.497 |
| Raw | 90.461 | 116.826 | 136.174 | 155.233 | 29.063 | 29.672 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_31006.1 | 1044 | 2e-24 | 925 - 984 | 100 | 60 / 60 | minus | ABC06221 ABC48970 |
| MLOC | MLOC_31006.2 | 969 | 2e-24 | 850 - 909 | 100 | 60 / 60 | minus | ABC06221 ABC48970 |
| JLOC1 | JLOC1_20438.1 | 972 | 8e-25 | 61 - 120 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28754 | 424 | 3e-25 | 265 - 324 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29464 | 424 | 3e-25 | 265 - 324 | 100 | 60 / 60 | plus |
Contig Sequence (424 bp)
>U35_29464 424 Hv_44K_v2 GCTAACTCTCCTCGCCCGACCCTCCAGAGAATGTGCGCCGTCACCTCTCCCTCTCCCTCT CCCCTCTCGTCGCAAGATCCAACACCACTGCCGTCGCCAGATCCAACCCCACTCCCGTCC CCGTCCACCCCGCCGCCGCCGCCGTCGTGAATCCCGCCGGCGTCAACCCCGCGCGCGCGT GCTCTGCGCCCCGTGTCGGCTCGACGGACTCCAGGACCTCCGGATCGGAGCCCCGCGCGC CTCGCCATGGCGGACAACGCGGTCAAGGCCTAGCTCAACGCGACAGATCGCTTCCAGTTC TAACACCGGCCGGCGAAAAGAGATCGGGCTCGCCAATCTCTCACCGGCTTCCCTCCGTCC CTTCCAAAGGGCGTTGCGGAGTCAAATCGCGCACTGGGAAGAGCTGATATGCAAGCGCTG CTCT
Homology of Contig U35_29464 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |