- Probe CUST_22484_PI390587928
- Source Contig U35_31784
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22484_PI390587928 | Hv_44K_v2 | ACTACAACAACTACAACCTCTCGCAGCCGCGCCACTTCTGCAAGGGCTGCCGCCGGTACT | 275 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.133 | 0.286 | 1.187 | 1.349 | 1.074 | 1.121 |
| Raw | 8.029 | 27.950 | 100.983 | 175.118 | 51.576 | 58.166 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_64612.1 | 1862 | 2e-24 | 501 - 560 | 100 | 60 / 60 | plus | ABC13717 |
| MLOC | MLOC_72432.1 | 587 | 7e-23 | 34 - 93 | 98 | 59 / 60 | minus | None |
| JLOC1 | JLOC1_42445.1 | 1564 | 8e-25 | 374 - 433 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48174.1 | 536 | 4e-23 | 11 - 70 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_31784 | 544 | 3e-25 | 276 - 335 | 100 | 60 / 60 | plus |
Contig Sequence (544 bp)
>U35_31784 544 Hv_44K_v2 CCAGGCCGAGCAGAGCAGATAGATAGCAAGCTTCGAAAGGTAGCTCCCTCCCCGCGGGAG GCTCGGCCACCATTTATCCCCTCCTAGAAGCATCCTGAGGCACGTGCGAGCAGTGCACGG CATGCAGGAGTTCCAGCCCATCCCCGGCCTGACCGGGCGGCTGTTCGGCGGCGCGGCGGA TCGTCCGGCGGGCCTCCTCCGCCGCGGCGGGGAGGCGGCGGCGCAGGAAGAGGTGCGGTG CCCGCGGTGCGACTCGGCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCGCA GCCGCGCCACTTCTGCAAGGGCTGCCGCCGGTACTGGACCAAGGGCGGCCTCCTCCGCAA CGTCCCCGTCGGGGGCGGCTGCCGCAAGCCCAAGCGAAAAGCCGCCGCCTCCTCCTCGGA CGTCGACAAGGACGGCGCCGGGGCCAGCGGAGACGCCAAGAACGCGCACTCCGGCTGCAG TGCTGGCAGCTCAAGCACCACCTCCGCTGCCTCGTCCGCTTCCACGAACACCGTCGACGT TGGT
Homology of Contig U35_31784 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |