barSeed - Barley Seed Development Database

Probe CUST_22481_PI390587928

Source Contig U35_17492

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22481_PI390587928	Hv_44K_v2	CATGCCTCTTGATCAAGCCCATGTTACTTCATTATAAAAGGAACTTGAGGAATCAAAAAA	689	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26813.2	1615	3e-22	1554 - 1609	100	56 / 56	plus	ABC07920 ABC07921 ABC27404
MLOC	MLOC_26813.1	1495	3e-22	1434 - 1489	100	56 / 56	plus	ABC07920 ABC07921 ABC27404
Harvest21	ABC07922	862	3e-25	792 - 851	100	60 / 60	plus
Harvest35	U35_17492	760	3e-25	690 - 749	100	60 / 60	plus

Contig Sequence (760 bp)

>U35_17492 760 Hv_44K_v2
GCACGAGGGGAGCTTGCAGAAAGCATAGGGGATCGCTTTGAGGAGAAGAAAGCTGCGCGA
GGATTAGGCGCATCACTGCAACGGTTGGGACAGTACAGAGAAGCAATGAGCTGGTACCAC
AAGGTTCTGGCGCTATCAAAGGAAACCGGCGAGGATTCTGGCTGCACCGAGGCTTACGGC
GCGATAGCAGACTGCTGCGCCGATCTCGGCGATTTGGAGGGAGCAGCGAGGTTGTATGAC
GAGTACATATCAAGGCTGCAGCCCCGCGATTGAGCGCTCGGGCGTTCTTGGTGAGTGTTT
AAACACTCGGCTTCTTCCTGCTTACTGATCATCATGCCAGAGCCCGTCAGTCGCCCTGCT
TCTGATGTCAAAGATTGCTTGCTTGCTATCTGGCGGAAAATGAGCCGATTTTGCTTGTCT
TTTAACTTGGCTGGAGGCACTTGAACTGTCCATTAGGTGGCCCTCTCTACTTCTACTCGT
GTATATAAATCGCGATGGTGCTACGGCATGTGCGGGTTCAGAGTTCTGTATGCAGGATTG
GCGATCCATCTTGTTGAAATTTTCCTTGAATTGGGATTGGCGACCCAAAAAAAAAAAAAA
ATTTTCCTTGAATTGGCTGGTCACTGTGCGGCTTCAGGACTGTATTACAGAGTGTCATAT
CCTGACACGTGATACAGCAACAGTTGCACCATGCCTCTTGATCAAGCCCATGTTACTTCA
TTATAAAAGGAACTTGAGGAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17492 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None