barSeed - Barley Seed Development Database

Probe CUST_22479_PI390587928

Source Contig U35_17493

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22479_PI390587928	Hv_44K_v2	AATTATATGAGGAATCAGGACCTTGATAAGGCGGTAACGGAGTTCAAGATAGCTCTGGAG	699	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.531	0.770	1.329	1.687	0.978	0.983
Raw	74.356	168.823	258.834	510.825	104.443	115.766

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26813.2	1615	2e-24	823 - 882	100	60 / 60	plus	ABC07920 ABC07921 ABC27404
MLOC	MLOC_26813.1	1495	2e-24	703 - 762	100	60 / 60	plus	ABC07920 ABC07921 ABC27404
JLOC1	JLOC1_18180.2	1845	8e-25	1065 - 1124	100	60 / 60	plus
JLOC1	JLOC1_18180.1	1513	8e-25	733 - 792	100	60 / 60	plus
Harvest21	ABC07922	862	3e-25	59 - 118	100	60 / 60	plus
Harvest21	ABC07920	1461	6e-22	682 - 741	97	58 / 60	plus	ABC07920
Harvest35	U35_17493	1344	3e-25	700 - 759	100	60 / 60	plus

Contig Sequence (1344 bp)

>U35_17493 1344 Hv_44K_v2
CCCAGTTCCCCCTCTTCCACACCTCTGCGGCCGTTTAGCCAACGCGAGGCGCCGCCGGCG
ACGGCGATGCAGGCGGCGGCCTCTTGTCGGGGCGCGGCAGCCTACCGCCGCGCTTGCCAC
TCTCCCCCGCGCCCTCCCGTTCCCTCTCTTCTTCTACCCATCCGCGTCGGCGTCGGACGT
TTCTCCGACGCGGCGGTTCCGCTCCGCCTCCGATTCGGCTCCCCGCCCCACCCTCGGGCT
CGCGGCGGCGGTGGCGATTTCGCGCGCCTGGATGCCAGGAACGGGGAGGCGTGGCAGCTG
ACGCGCGCGCTCGCGCTCATCCTTCCCGATCTCCAGAAAACGGCGCATGCCAGCCTGCTG
AAAACTGCTGTTCTTTCAACAATGTCGATGCTCATAATGCCTCTTGAGGCATCAGCGGAG
ACATGCCAACCGACTAGTTCTTTTGCCAATATGCCCATTTTTATTGCTGTCGCTCTAATA
GGAGCTGCTGTGGGTGGATTATTAGCACGGCAAAGAAAGGAGGAACTGAAGCGATTGAAC
AATCAACTTCGTCAGATTAATACTGCTCTTAGAAGGCAGGCGCAGATTGAATCATTTGCT
CCCGGTCTTACTTATGCGCCTGTAGGAAGAACAGGAGAAACTGAGGTCATTGTTGATCCT
AGGAAGCAGCAGTTGGCTGTAAATTTGAAAAACGGGAAGAATTATATGAGGAATCAGGAC
CTTGATAAGGCGGTAACGGAGTTCAAGATAGCTCTGGAGCTTGCAGAAAGCATAGGGGAT
CGCTTTGAGGAGAAGAAAGCTGTGCGAGGATTAGGCGCATCACTGCAAAGGTTGGGACAG
TACAGAGAAGCAATGAGCTGGTACTACAGGGTCCTGGCGCTATCAAAGGAAACCGGCGAG
GATTCTGGCTGCACCGAGGCCTACGGCGCGATAGCCGACTGCTGCGCCGATCTCGGCGAT
TTGGAGGGAGCAGCGAGGTTGTATGACGAGTACATATCAAGGCTGCAGCCCCGCGATTGA
GCGCTCGGGCGTTCTTGGTGAGCAAACACTCGGCTTCTTCCTACTTACTGATCATCATGC
CAGAGCCCGTCAGTCGCCCTGCTTCTGATGTCAAAGATTGCTTGCTTGCTATCTGGCGGA
AAGGAGCCGATTTTGCTTGTCTTTTAACTTGGCTGGAGGCACTTGAACTGTCCATTAGGT
GGCCCTCTCTACTTCTACTCGTGTATATAAATCGCGATGGTGCTACGGCATGTGCGGGTT
CAGAGTTCTGTATGCAGGATTGGCGATCCATCTTGTTGAAATTTTCCTTGAATTGGGATT
GGCGACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17493 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37470.1	320	4e-125	protein\|tetratricopeptide repeat containing protein, putative, expressed
Brachypodium v1_2	Bradi3g47280.1	309	1e-134
Arabidopsis v10	AT3G14110.3	317	4e-73	\| Symbols: FLU \| Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:4676222-4677602 REVERSE LENGTH=317