barSeed - Barley Seed Development Database

Probe CUST_22475_PI390587928

Source Contig U35_17495

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22475_PI390587928	Hv_44K_v2	GGTCTTAGAAGTAAAAGTAAAGATGGTTATCGACGCATTTGGCGGAATCCTGCTAAAAAA	513	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.055	4.342	1.897	0.696	0.186	0.178
Raw	2917.147	1960.073	742.043	445.926	39.825	43.060

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21748.1	669	3e-22	526 - 581	100	56 / 56	plus	ABC07308
MLOC	MLOC_21749.1	342	3e-22	197 - 252	100	56 / 56	plus	ABC07308
JLOC1	JLOC1_15083.1	803	1e-22	591 - 646	100	56 / 56	plus
Harvest21	ABC07308	680	3e-25	514 - 573	100	60 / 60	plus	ABC07308
Harvest35	U35_17495	681	3e-25	514 - 573	100	60 / 60	plus

Contig Sequence (681 bp)

>U35_17495 681 Hv_44K_v2
GCACGAGGACCACAGCAATCCTCTTCCCTTCGCCAGCACGAGCAAGGAGATGGAGGGGAA
GAAGAGAGCGGCGGCCATTGCCGCCCTGTGCATGGTCCTACTCCTCATGCAGGCAAGGCC
ATCCCATCAGCAGTTCTCCGACTACGCCTGCGAGTGCATCCGGCAGTGCTACCCCGCGTG
CAGGGACAGCACCCCGCCGTGGCTCTGCAAGATCAAGTGCGCCGGTAGCTGCCACAACGG
CGACAGGAAGGACGCACTTACCGCCTGCAGGATCGCCTGCCTCACGAGCCCCGTCTGCGG
CCTGTCGACACCGCCCGTCGCTCCAGGTGATGTTGATCCTTGTACCAGGGAGTGCGACAA
GCTGTGGGGTGGCCATGGTCACGCCAAGGAACCTTGAAGAGCGACGAGCCGGTCGATCCG
GGATCACATGATGTCGAATGGCGATGATTGCTGCACCAATCAATAAAATAAAATGTATTT
CGCTTCGGTGCATCACTTGTGAGAAAGTTTGTGGGTCTTAGAAGTAAAAGTAAAGATGGT
TATCGACGCATTTGGCGGAATCCTGCTAAAAAAAAAAAAAAAAATGGCTTTGATTTTACT
TTCCTTGTCTTAAGAGGATCGTTTAGTGTTTACACACTTTATTTTTTAAGAGCAGATTGT
TTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17495 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None