- Probe CUST_22474_PI390587928
- Source Contig U35_31789
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_22474_PI390587928 | Hv_44K_v2 | TGGAGTGCCCGCGTTGCAGCTCCAGCGACACCAAGTTCTGCTACTACAACAACTACAGCA | 426 | GeneList: purple MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.129 | 0.443 | 1.431 | 1.881 | 1.131 | 1.544 |
Raw | 5.893 | 33.442 | 99.748 | 206.060 | 45.157 | 64.413 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK376848 | 1144 | 2e-24 | 430 - 489 | 100 | 60 / 60 | plus | None |
MLOC | AK375174 | 1770 | 7e-23 | 1019 - 1078 | 98 | 59 / 60 | plus | ABC20418 |
MLOC | AK371500 | 1135 | 7e-23 | 408 - 467 | 98 | 59 / 60 | plus | None |
MLOC | MLOC_72873.1 | 558 | 7e-23 | 86 - 145 | 98 | 59 / 60 | minus | None |
MLOC | MLOC_72873.2 | 555 | 7e-23 | 86 - 145 | 98 | 59 / 60 | minus | None |
MLOC | MLOC_20442.1 | 1206 | 7e-23 | 237 - 296 | 98 | 59 / 60 | plus | ABC20418 |
MLOC | MLOC_20442.2 | 904 | 7e-23 | 138 - 197 | 98 | 59 / 60 | plus | ABC20418 |
JLOC1 | JLOC1_48495.2 | 538 | 4e-23 | 394 - 453 | 98 | 59 / 60 | plus | |
JLOC1 | JLOC1_48495.1 | 540 | 4e-23 | 396 - 455 | 98 | 59 / 60 | plus | |
JLOC1 | JLOC1_14163.1 | 1017 | 4e-23 | 150 - 209 | 98 | 59 / 60 | plus | |
Harvest21 | ABC48220 | 635 | 1e-23 | 339 - 398 | 98 | 59 / 60 | plus | |
Harvest21 | ABC30742 | 502 | 1e-23 | 379 - 438 | 98 | 59 / 60 | plus | |
Harvest35 | U35_31789 | 607 | 3e-25 | 427 - 486 | 100 | 60 / 60 | plus | |
Harvest35 | U35_31812 | 571 | 1e-23 | 463 - 522 | 98 | 59 / 60 | plus | |
Harvest35 | U35_27570 | 527 | 1e-23 | 404 - 463 | 98 | 59 / 60 | plus | |
Harvest35 | U35_23195 | 665 | 1e-23 | 369 - 428 | 98 | 59 / 60 | plus |
Contig Sequence (607 bp)
>U35_31789 607 Hv_44K_v2 ATAGCCATCGGTTACTACAACTAGGCCACGACCAACCGCTCCCGTCGATCGATCCGTCAG CTCCATTACCTGATTGCCGCCGTCGCCGTCGCCGCCGCCCAACAGCTCAGACTGACCGCT ACGTCTCGCACTCCTAGCTAATCGCCTAGCTACGAGCAGGTCGGTTAGAGCTAGCTAGCT GGTGATCACCACGCACGCCCGCTGCACGTTTTAAGCCGGCCGGGTCGGACACGGCATGCC CTGCTCCGCTCGCTCGGCAAACGATGGCTCCAGCTTCCGCCTCTGTCGTCCCGGCCGCCA CCTCCAACGCCGGCGCCAAGCGCACCGCCGACGCCCATGACCCCGACGCTGCTGAGCATC CACTCCAGCAGGAGGGCGCGGTGACCAAGAAGAACGTCCAGAGCCAGCAGCAGCCGCAGC CGAAGCTGGAGTGCCCGCGTTGCAGCTCCAGCGACACCAAGTTCTGCTACTACAACAACT ACAGCACGGCGCAGCCGCGCCACTACTGCCGCACCTGCCGCCGTTACTGGACGCACGGCG GCACCCTGCGCAAGGTCCCCGTCGGTGGCGCGTGCCGACGCGGCTCCCGCAGCAGCAACA GCGCCGC
Homology of Contig U35_31789 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |