barSeed - Barley Seed Development Database

Probe CUST_2246_PI390587928

Source Contig U35_2974

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2246_PI390587928	Hv_44K_v2	TGCGTGGCTGGATGTTATATTTATGTACTCCTTCCATTCCAAAATTCTTGTCTTAGATTT	1253	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.377	1.326	1.210	0.817	0.270	0.267
Raw	205.902	308.211	249.206	258.640	31.810	32.742

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12926.4	1333	2e-24	1270 - 1329	100	60 / 60	plus	ABC08043
JLOC1	JLOC1_8707.3	2070	8e-25	1944 - 2003	100	60 / 60	plus
JLOC1	JLOC1_8707.2	3034	8e-25	2908 - 2967	100	60 / 60	plus
JLOC1	JLOC1_8707.1	1488	8e-25	1362 - 1421	100	60 / 60	plus
Harvest21	ABC08043	1321	3e-25	1254 - 1313	100	60 / 60	plus	ABC08043
Harvest35	U35_2974	1361	3e-25	1254 - 1313	100	60 / 60	plus

Contig Sequence (1361 bp)

>U35_2974 1361 Hv_44K_v2
GAGAGCTAGGGTTCCGCTCTCCCATCCCCATCCCCATCCCCATCCCCGCAGCCGTCGCCT
CCTCTCCTCTCCCCGCGGCCCCCGAACGCCGGCCACCGGCGAGATCCGACCGACCGACGG
CTGCTTAAGCTTGAGACATGTCGCATTCCAACCAAGTGAGGTACACCGCGCGCTCCATCA
CGCCCCCGGCCGACAGGGACAGCGGCTCCAAGTCGCCCCCGCCCAGGAGGCGCGCCGCTT
CCAAGTCCCCTCCCCTGCCACCTCCTCCCCCTTTTCCTCCCAAGGGGGTGCGCACCATCT
CCAGCTCCCCTCCGCCAACAAGACGCACCGTCTCAAGGTCCCCTCCACCAAAGAGGCGCG
CCAGGTCAAGGTCAAGGTCCAGATCCAGGTCCAGGAACAGGAACAGGAGCAGGAGCCGCT
CCAGGAGCAGAGATAAAGACCAAGTCAGGAATCCTGGGAACAACCTCTATGTCACTGGAC
TGTCCATACGGACACAAGAAACTGACCTGGAGAAGTTCTTCAGTAAAGAGGGCAAGGTTA
AAGACTGCCGTGTCGTTACGGACCCTCGTACCAAGGAATCACGTGGCTTTGCGTTTGTCA
CCATGGAGAATGTTGAGGATGCAAGGCGCTGCATCAAGTACTTGCACCACACTGTACTTG
AAGGCCGCCTCATCAGTGTGGCAAAGGCAAGGAGAACTCGTGAGAGGACCCCAACTCCTG
GAGAATACTGTGGTCCAAGAGGTGGGCGCTCCCGAGTGGAACCGCGGAGCCGTTCTCCAT
CTCGTCGGTCTAGCAGGTCGTCGAGGGACCGCTCGAGGTCCCCGGCCGGAAGGAGGGACA
GAGACAGAGACAGAAATAGCAGGGACAGGAAGCGCGACTGAAACAGAAAGACTATGTATC
GCCTGGAGTTGTCGAGTATGAAGGTGTCTTGGATTGTTGGTGAATGTTTGAGATGAAGAA
AGACTATGTATGCATGATGCACCTTGGTCTGTATTTCTGCTGGACTATGGGGATGAGCCG
ATTTGTCTTGCCTGCCAGAGAGGATTCGCCTAACGTTTTCTAGCTTGTGTAGCGTTATCT
TGTGTGGTTATGTCTAAGTTGTACTTTGGTCTTTCCCGTTATCGAAACGAAAACGAAACG
TACTCATCTATTTTGTACTCCCTCTAACAAGAAATATAAGAGCAATCCCTTCCCTTATAT
TTCTTTACCAAGGGAGTACTATGGACAGTCTTGCATGCCTTTTCTGGTTTCTTTGCGTGG
CTGGATGTTATATTTATGTACTCCTTCCATTCCAAAATTCTTGTCTTAGATTTGTCTATA
TATAAATGTATCTAGTCACATTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2974 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None