barSeed - Barley Seed Development Database

Probe CUST_22469_PI390587928

Source Contig U35_17499

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22469_PI390587928	Hv_44K_v2	CAGTAGATAACGAATTTACTTAAATAGAACTTCTGCTCAGCATTGGTAATCGTTGCATCT	603	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62815.1	2102	2e-24	1144 - 1203	100	60 / 60	minus	ABC09366 ABC40308 ABC49399
Harvest21	ABC09367	664	3e-25	604 - 663	100	60 / 60	plus
Harvest35	U35_17499	664	3e-25	604 - 663	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_17499 664 Hv_44K_v2
GTGCTCGTCGTCTCCAACCCCGTCGACGTCCTCACCTACGTCGCCTGGAAGCTCTCCGGC
TTCCCGGCCAGCCGCGTCATCGGCTCCGGCACCAACCTCGACTCCTCCCGCTTCAGGTTC
CTCATCGCCGAGCACCTCGACGTCAACGCGCAGGACGTGCAGGTAAATAAAACTCACTCC
TGAATCCATCCATGAATCCGTCGCCGGAGTGGGCAGTGGAGTCAGTAGGGTGATGCCACG
CGGCGGTGGCGCCGTGGAAGCATGTGCCTGTCGTTGACTGGTATCCCCATTCGACAGTGT
CGACATTCAGTATTACTACTAGCATATTGTTTGTTCTTTCGAACGGCCAGGCTTGTTGAT
TATTTTTGGAGTAGATACTAAGAAATTTATACTACTAGTAGATACTGAGAAACATCATCG
GTTCATGTTCGATTTACTGAACAAACATGCAACCTTCAGTGTTGTTTTTTACCCGCAAAA
ATCTAGACTTTCTTAATTTGTTTGGTGGCTGCATAATTACTCCTAGATCATACTTTTGGT
GATCGATACATATCTTTTCATACGAGATGCAATATCTGTAAATTACAATAACGTTTGAAA
ACACAGTAGATAACGAATTTACTTAAATAGAACTTCTGCTCAGCATTGGTAATCGTTGCA
TCTA

Homology of Contig U35_17499 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None