- Probe CUST_22468_PI390587928
- Source Contig U35_43763
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22468_PI390587928 | Hv_44K_v2 | GAACGGAGCACAGTTCAACAATATTACTATTCATCATGTAACACTAACATTTGTTATGGC | 32 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.531 | 0.863 | 0.733 | 1.777 | 1.532 | 1.765 |
| Raw | 3.973 | 12.287 | 10.166 | 38.394 | 11.828 | 14.318 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK366160 | 1880 | 7e-23 | 1791 - 1850 | 98 | 59 / 60 | plus | ABC40815 |
| MLOC | MLOC_11243.1 | 4190 | 7e-23 | 1552 - 1611 | 98 | 59 / 60 | plus | ABC09037 ABC40815 |
| MLOC | MLOC_11243.2 | 4267 | 7e-23 | 1639 - 1698 | 98 | 59 / 60 | plus | ABC09037 ABC40815 |
| JLOC1 | JLOC1_7431.5 | 2080 | 4e-23 | 1492 - 1551 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_7432.3 | 2968 | 4e-23 | 1001 - 1060 | 98 | 59 / 60 | minus | |
| JLOC1 | JLOC1_7432.2 | 3343 | 4e-23 | 1376 - 1435 | 98 | 59 / 60 | minus | |
| JLOC1 | JLOC1_7432.1 | 2852 | 4e-23 | 885 - 944 | 98 | 59 / 60 | minus | |
| JLOC1 | JLOC1_7431.4 | 2109 | 4e-23 | 1521 - 1580 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_7431.3 | 2116 | 4e-23 | 1528 - 1587 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_7431.2 | 2146 | 4e-23 | 1558 - 1617 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_7431.1 | 2139 | 4e-23 | 1551 - 1610 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC40815 | 622 | 3e-25 | 33 - 92 | 100 | 60 / 60 | minus | ABC40815 |
| Harvest35 | U35_43763 | 622 | 3e-25 | 33 - 92 | 100 | 60 / 60 | minus |
Contig Sequence (622 bp)
>U35_43763 622 Hv_44K_v2 TTTTTTTTTTTTTTTTTCTTGAACTGTGTATTGCCATAACAAATGTTAGTGTTACATGAT GAATAGTAATATTGTTGAACTGTGCTCCGTTCATGATGGAAAGATGCCTTCGCTAGCTGA TCATAACTTACGATGAGCAAAGCTTAAGCTTCTAAAGACGGGCTAAGCTCAATATAAACC TATGAGCCTGCCGTGACAGCAGCTAACTGCCTACAGTTGAGCGGCCAGTACTTCATTCCA TGTGTCTGGAACACCAGGAAGGCACCAATGCAAGCAATCTTGGACCCCTGGTGTAGCTTT GATACTGGACTTGGATATGTGCCCTTCGTCGCGTAGCCGCGAAAGCGCGGTGATATCCAA GAGCTTGATCCTAGTGCCTTTGACCGCCTCCTCGGAGTCGGCATCTTGAGAATGATTCTG AAACACCATGTTACCCTTGGCCAAAGGATCCTTGTTGTCGCAAGTGCCTCCGGTGTTCCA CTCCCCATTGAAGAAATGCCTTGGTGACAGTGACCTGTAAAACACCTTCAGGTGGGGATA GCTAGGAAGCTGGGCATCTAACCACTTCATAACACCATGTATAGTGAAGTTCTTCGCCTT CCACATGCTTGCGATCTCTCGG
Homology of Contig U35_43763 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g36750.2 | 455 | 2e-77 | protein|expressed protein |
| Brachypodium v1_2 | Bradi4g05130.2 | 446 | 9e-83 | |
| Arabidopsis v10 | AT5G20680.1 | 551 | 2e-57 | | Symbols: TBL16 | TRICHOME BIREFRINGENCE-LIKE 16 | chr5:6998946-7001596 FORWARD LENGTH=551 |