- Probe CUST_22464_PI390587928
- Source Contig U35_29472
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22464_PI390587928 | Hv_44K_v2 | TATGGCTTTGTTGAGTTTAGCAATCCCCGGGATGCAGATGATGCAAGGTATGAGCTTGAT | 363 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.459 | 1.091 | 1.248 | 0.893 | 0.504 | 0.461 |
| Raw | 207.401 | 231.391 | 244.818 | 283.386 | 54.217 | 55.351 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57913.6 | 1465 | 2e-24 | 727 - 786 | 100 | 60 / 60 | minus | ABC03471 |
| MLOC | MLOC_57913.3 | 1783 | 2e-24 | 683 - 742 | 100 | 60 / 60 | minus | ABC03470 ABC03471 |
| MLOC | MLOC_57913.2 | 1381 | 2e-24 | 796 - 855 | 100 | 60 / 60 | minus | ABC03470 ABC03471 |
| MLOC | MLOC_57913.1 | 1401 | 2e-24 | 865 - 924 | 100 | 60 / 60 | minus | ABC03470 ABC03471 |
| MLOC | MLOC_57913.4 | 1492 | 2e-24 | 683 - 742 | 100 | 60 / 60 | minus | ABC03470 ABC03471 |
| MLOC | MLOC_57913.5 | 1550 | 2e-24 | 683 - 742 | 100 | 60 / 60 | minus | ABC03470 ABC03471 |
| JLOC1 | JLOC1_37607.5 | 2509 | 8e-25 | 636 - 695 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37607.4 | 2262 | 8e-25 | 389 - 448 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37607.3 | 2319 | 8e-25 | 446 - 505 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37607.2 | 2298 | 8e-25 | 425 - 484 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37607.1 | 2190 | 8e-25 | 317 - 376 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28763 | 592 | 3e-25 | 364 - 423 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03471 | 1247 | 3e-25 | 371 - 430 | 100 | 60 / 60 | plus | ABC03471 |
| Harvest35 | U35_29472 | 592 | 3e-25 | 364 - 423 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1165 | 1257 | 3e-25 | 371 - 430 | 100 | 60 / 60 | plus |
Contig Sequence (592 bp)
>U35_29472 592 Hv_44K_v2 GTCCCCGTCTCCGTTGTCGCCGCCTCGCCGGGCTAGGGTTCTAGCCACGCAGCAGCCGCC GGCGCCGCTTGCATCGCGGGGTAAGTAGGTGGGCGCCACAGTAATCCTGACTGGATTATC TCTTCCGCGAGATTCCCGTTCAAGATGCCCCGGTATGACGACCGTTACGATCGCTATGAT GACCGTTATGATCGTTACGACGACCGTTACGATCGCTATAATGACCGTTATGATCGGTAT GACCAATATGGTGGCAACACCAAGTTGTACGTGGGCCATCTTTCTACCCACACCCGGACC AAGGATGTTGAGTACCTTTTCGGCAGATATGGGAGAATACGATGTGTGGAGCTGAAGCAT GATTATGGCTTTGTTGAGTTTAGCAATCCCCGGGATGCAGATGATGCAAGGTATGAGCTT GATGGCCAAGATGTTGACGGGAGCCGTATCATTGTTGAGTTTGCAAGAGGGACCCCGCGT GGCCCAGGAGGTTCCCGCGAGTACTTGGGCAGAGGACCTCCTCCTGGTTCTGGCCGCTGC TTTAACTGTGGGATTGATGGGCACTGGGCTCGTGACTGCAATGCTGGCGACT
Homology of Contig U35_29472 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g06290.4 | 209 | 9e-67 | protein|splicing factor, arginine/serine-rich, putative, expressed |
| Brachypodium v1_2 | Bradi2g34687.1 | 311 | 3e-68 | |
| Arabidopsis v10 | AT2G37340.1 | 290 | 1e-54 | | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 | arginine/serine-rich zinc knuckle-containing protein 33 | chr2:15670372-15672331 REVERSE LENGTH=290 |