barSeed - Barley Seed Development Database

Probe CUST_22454_PI390587928

Source Contig U35_29478

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22454_PI390587928	Hv_44K_v2	AGAGCTTCTCCTCCTATCTGTTTCTCGTCGTTCCTTGCCGTGTGATTGAATTGAATCTGA	484	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354016	1512	2e-24	527 - 586	100	60 / 60	plus	ABC02510 ABC03253
MLOC	MLOC_70087.1	1020	2e-24	179 - 238	100	60 / 60	plus	ABC02510
MLOC	MLOC_70087.2	1349	2e-24	179 - 238	100	60 / 60	plus	ABC02510
MLOC	MLOC_70087.3	489	2e-24	179 - 238	100	60 / 60	plus	ABC02510
JLOC1	JLOC1_46493.3	1017	8e-25	176 - 235	100	60 / 60	plus
JLOC1	JLOC1_46493.2	1085	8e-25	178 - 237	100	60 / 60	plus
JLOC1	JLOC1_46493.1	488	8e-25	178 - 237	100	60 / 60	plus
Harvest21	ABC03251	772	3e-25	485 - 544	100	60 / 60	plus
Harvest35	U35_29478	635	3e-25	485 - 544	100	60 / 60	plus

Contig Sequence (635 bp)

>U35_29478 635 Hv_44K_v2
GACCACAGCAACCCTCCTCCGACGACTCCGCCGTCTCCGCTCCCATCATCGACGCGCCTG
GCCTCCTCCTCCGCCTCCCCTACCGCCGCGGTGGTGCGCGTGGTCTCTCCACGACCTGAT
GAGCTCCTGCGATCTGCCCCGCCGCGTGGTGGTTCTGCCACGACGACCCCCAAAACCACG
AGCCACGTTCGTGGCGGCGCAGCCTCCTCCTCCATCGGCCATCGCGGACCGCGGTATCGT
GCCGGCAATAGACTCATTTCCCCCACCAACTGAGCCCCAAACCCTTTTCCCCTCTACTTC
TACCCCCCCCAGCCCTCCCCTATCGCAGAAGCACACGGCGCATACAGATTGGAACTGGAG
GACTCAATCTGATAGCAGAAGCTTTCGTTTCCCTTCTCGGTGGAATGGCGGAGGAGAAGG
GGACACTGCAGGCGATGCGGGGGTGGGTTGTGGACCACCAGTTGCGGGTCGTAGTTGCGC
CGCCAGAGCTTCTCCTCCTATCTGTTTCTCGTCGTTCCTTGCCGTGTGATTGAATTGAAT
CTGACCCCCTTTCTCGTCGTGTTGGTTTCACACGGACGCTATGGCTCACGGGGATCGCGG
GATCCATCGCCTACAACTGGTCCAGGCCCGGCATG

Homology of Contig U35_29478 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None