barSeed - Barley Seed Development Database

Probe CUST_22449_PI390587928

Source Contig U35_31794

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22449_PI390587928	Hv_44K_v2	TACGTGAGAGCTTGAGTTACTTGATCTGCTGATCGCCGATCTCGACATCGCCATGGGCGG	33	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.368	1.023	2.629	2.014	0.731	1.228
Raw	3.324	21.838	50.203	60.952	6.722	13.908

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18785.1	1635	2e-24	1172 - 1231	100	60 / 60	minus	ABC05345
JLOC1	JLOC1_13009.1	1629	8e-25	312 - 371	100	60 / 60	plus
Harvest21	ABC48991	585	3e-25	27 - 86	100	60 / 60	plus
Harvest21	ABC42791	200	3e-25	33 - 92	100	60 / 60	plus
Harvest21	ABC05345	1338	3e-25	25 - 84	100	60 / 60	plus	ABC05345
Harvest35	U35_47697	585	3e-25	27 - 86	100	60 / 60	plus
Harvest35	U35_31794	508	3e-25	34 - 93	100	60 / 60	plus
Harvest35	U35_1286	1378	3e-25	65 - 124	100	60 / 60	plus

Contig Sequence (508 bp)

>U35_31794 508 Hv_44K_v2
CCACAATGCACGCGCCAGTCGCCACCGTATACGTACGTGAGAGCTTGAGTTACTTGATCT
GCTGATCGCCGATCTCGACATCGCCATGGGCGGCCTCTCCATGGGCCAGGCCTTCGTGCA
GGCCCCCGAGCATCGCACCAAGCCGACCCTCGCCGACGCGGACGGCATCCCGGTCATCGA
CCTCTCCCCTCTCGCCGCCGGCGACGAGGCCGGCGTGGACGCGCTCGCGGCCGAGGTGGG
CAGGGCGAGCCGGGACTGGGGGTTCTTCGTGGTGGTGCGCCACGGCGTGCCGACGGAGAC
GGTGGCGCGCGCGCTGGAGGCGCAGAGGGCCTTCTTCGCGCTGCCGGCGGAGAGGAAGGC
GGCCGTGCGGAGGGACGAGGCGGCGCCGCTGGGGTACTACGAGTCGGACCACCTTCATCC
GGCTCAACCACTACCCGCCCTGCCCCAGCCCCGACCTCGCCCTCGGCGTCGGCCGCCACA
AGGACGCCGGCGCGCTCACTGTCCTCTA

Homology of Contig U35_31794 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g15149.1	297	9e-52	protein\|oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Brachypodium v1_2	Bradi1g14580.1	355	3e-53
Arabidopsis v10	None