barSeed - Barley Seed Development Database

Probe CUST_22448_PI390587928

Source Contig U35_31795

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22448_PI390587928	Hv_44K_v2	AATTGCGACGCTTGTCAGGAAACGACTATATGGGATGCGTCAGGAGCTGTTTCAATTCTT	540	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.762	1.815	1.141	0.832	0.451	0.374
Raw	33.536	44.213	29.597	30.386	5.487	5.558

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376176	1636	2e-24	530 - 589	100	60 / 60	plus	None
MLOC	MLOC_57301.4	681	2e-24	80 - 139	100	60 / 60	minus	None
MLOC	MLOC_57301.5	691	2e-24	80 - 139	100	60 / 60	minus	None
MLOC	MLOC_57301.1	995	2e-24	384 - 443	100	60 / 60	minus	None
MLOC	MLOC_57301.2	1118	2e-24	507 - 566	100	60 / 60	minus	None
JLOC1	JLOC1_37117.2	867	8e-25	553 - 612	100	60 / 60	plus
JLOC1	JLOC1_37117.1	926	8e-25	553 - 612	100	60 / 60	plus
Harvest35	U35_31795	601	3e-25	541 - 600	100	60 / 60	plus

Contig Sequence (601 bp)

>U35_31795 601 Hv_44K_v2
TCGAGCACTGTTGGCCGGCTCTTTCGGCCGTACCGCGCTGCGAGCAGCAATGGCGTTGGC
CGCGGCCGCGCGCAGAAGCCTCGCATCCGGTGGCCTCTCCGGTACCCTCGCCCGCCGCCT
CCATCCGTCACTCCCCCAACTGCTTCCATCCAACCCCACCGGCGATCCCCGAAAACCCTC
GCCCCTTCCACCCCCACCCGCACCACGGCCGTTTCACTTCGCGCTCGCCCCTCGCGGGAC
ACCCCATACCCTAAGCTTCCTCCCGTTCGGTCTTCACCTCCTCCCCGGGCCATCCCGCCG
CAGCTTCTCCTCCTCCCGCGACACCGGCTTCACCGACGGCCTCACCGATGCCGCCCATTC
CGCAGCGTCCGTGGCGGCCCCGGCGAGCTTCCCCGGCGTGGTGGCGTGGGCCGCGGAGGA
CTCGTCAATGGCCGTCGCGGCGGTGCAGCATCTCATCGATGCGGTCCATTCCGTCACCGG
TCTGAACTGGTGGATTTCTATTGCTCTCCCCACAGTGCTGCTACGCTGTGGGATGTTCAC
AATTGCGACGCTTGTCAGGAAACGACTATATGGGATGCGTCAGGAGCTGTTTCAATTCTT
C

Homology of Contig U35_31795 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None