- Probe CUST_22444_PI390587928
- Source Contig U35_31799
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22444_PI390587928 | Hv_44K_v2 | ATGGTTCGCCGCAAGTTCCGGCTGTCCGACATGATACCCAACGCATGGTTCTACAAGCTC | 130 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.410 | 0.692 | 1.623 | 1.649 | 1.119 | 1.188 |
| Raw | 4.212 | 12.807 | 27.486 | 44.368 | 9.666 | 12.629 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22579.1 | 1547 | 2e-24 | 110 - 169 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_15654.1 | 1481 | 8e-25 | 115 - 174 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_31799 | 523 | 3e-25 | 131 - 190 | 100 | 60 / 60 | plus |
Contig Sequence (523 bp)
>U35_31799 523 Hv_44K_v2 TCGAGCACTGTTGGCCTACGGGTGGTCGTGCTCGTATTTTCTTTTTCCTCGCTGGTCCCC TGCTCCACCTCTCCACCTCGTACTGTCGTACAGAGCGAACAGAGCGCGCACCGGCGGCCG GCGAGGGCGCATGGTTCGCCGCAAGTTCCGGCTGTCCGACATGATACCCAACGCATGGTT CTACAAGCTCCGCGACATGCGCCCCCGCGGAGGCGGCGGCGTTGGGGTGCATCATCGGTC CTCCTCGGCTCGGTCCTACCAGCCGCCGTCGTGGAACCGGGAGTCGTCGGCTCGGTGGAG CGTGGAGGCGGCGCCGCAGCCGCCGTCGTCACGGTGGAACAGGGCGGCCGACAACGACGT CAAGCAGCCGGAAGCCGACGTCGAGCCGCCGGTCACGCCGACGAAGGGGTCGCCCCGTGC CCCGCTCCCTCGCAGGGCGTCGTACTACTACTCCACCAGAGACAGGGAGGTCCCTGCGCC GCCGGCTCCGAAGCCGCCCAGGGCCAAGGACGCGCCATCGCCG
Homology of Contig U35_31799 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |