- Probe CUST_22442_PI390587928
- Source Contig U35_29480
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22442_PI390587928 | Hv_44K_v2 | CTCATGTCTCTTATACGACAAGATGTTAAAAATTCTTTGCAGCCTTTATTTAAGCACGTG | 475 | GeneList: darkorange2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.229 | 0.919 | 1.326 | 1.103 | 0.825 | 0.801 |
| Raw | 157.775 | 161.137 | 231.854 | 271.803 | 78.324 | 84.870 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK249381.1 | 1980 | 2e-24 | 457 - 516 | 100 | 60 / 60 | plus | ABC06423 |
| MLOC | AK365484 | 2036 | 2e-24 | 433 - 492 | 100 | 60 / 60 | plus | ABC06423 |
| MLOC | MLOC_13875.2 | 1046 | 2e-24 | 494 - 553 | 100 | 60 / 60 | minus | ABC06423 |
| MLOC | MLOC_13875.1 | 1011 | 2e-24 | 412 - 471 | 100 | 60 / 60 | minus | ABC06423 |
| JLOC1 | JLOC1_9430.2 | 1049 | 8e-25 | 544 - 603 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9430.1 | 1000 | 8e-25 | 495 - 554 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28776 | 538 | 3e-25 | 476 - 535 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06423 | 2026 | 3e-25 | 463 - 522 | 100 | 60 / 60 | plus | ABC06423 |
| Harvest35 | U35_29480 | 538 | 3e-25 | 476 - 535 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2641 | 1999 | 3e-25 | 463 - 522 | 100 | 60 / 60 | plus |
Contig Sequence (538 bp)
>U35_29480 538 Hv_44K_v2 CTTTTTTCTCTTCCTCTAACCCCTTCGTAACCGGAACCCTAACACCCAAATCCACCACTC CCCGCCTCCGCCCTTTTCCATGGCAACCGCCAACGCCGACGCTGCCGAGGTCGAGCGGCT CTACGAGCTCGGCGACCGACTTTCCTCAGCCAAAGACAAGTCCCAGCACGCGGCAGACTA CGAGGCGATTATAGCGTCGGTGAAGGGGCAAAACGTTAAAGCGAAGCAGCTGGCGGCGCA GCTCATCCCCCGTTACTTCCGGAGCTTCCCAGCCCTCGGTACCTTCGCCATGGAAGCAAT GTTCGACCTCGTTGAGATGGAAGAGCTCGCGATGTACTTACAGATCAGAATACAAGCTAT TCGTGGATTTCCGCTTCTTGCCAAAGATGCAGAATTCATCTCAAAAATTGCAGATATTCT TGGTCAGCTCCTTACAAGTGAGGAAAATGTGGAGCGTGATGCTGTTCATAAAGCACTCAT GTCTCTTATACGACAAGATGTTAAAAATTCTTTGCAGCCTTTATTTAAGCACGTGGAG
Homology of Contig U35_29480 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g20930.1 | 538 | 1e-79 | protein|apoptosis inhibitor 5, putative, expressed |
| Brachypodium v1_2 | Bradi3g11090.1 | 544 | 2e-82 | |
| Arabidopsis v10 | None |