barSeed - Barley Seed Development Database

Probe CUST_22439_PI390587928

Source Contig U35_29482

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22439_PI390587928	Hv_44K_v2	TTCTTATTCGCCTCCCTTCTCCTTTCGCGAAAGAACAAAAGAAATCATGGACGGGAAAGG	184	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_517.2	3861	2e-24	3289 - 3348	100	60 / 60	minus	ABC09937
Harvest21	ABC28778	677	3e-25	185 - 244	100	60 / 60	plus
Harvest35	U35_29482	677	3e-25	185 - 244	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_29482 677 Hv_44K_v2
CTCCGCCGCGGCCCGGTAAGCCTCCTCCCTCCCGGCCAGCCACCCCGCCGCCGCCACGAG
CCGGCCCGTCACCCCCCTCCCCACGGCGTCAACGTTGTTCATTCCCCCTCCCGGCCATCC
CGCGAGCGAATCCTCGCCAAGGCGGGGAGGGGCGAAAGAAAAAGACGGGTCTCTCTCCAT
CTTATTCTTATTCGCCTCCCTTCTCCTTTCGCGAAAGAACAAAAGAAATCATGGACGGGA
AAGGCCGGCCGAGCTTTTGCGCTCTTTCTCGCGAGCGCGCGTCCAGAGGCCACCAGCGTA
GGCCGGCGTAGTATATAGGTTGGCGCCGCCAGTTGCCGCGCGCCACGCTTTCTCGAATTC
CTCGTTCCCTGGCGAAGGGCGCTGCTTTAGATCTGCGCGCGGCGTCCTCTCCTCGCTCCT
GGCACTCGCTGGTTGGTGTGAGTGCGAGTGAGGCGATGCTTAACAAAGCTTAATTCCTTG
GCTGGGCTGGCTTTTGGTTGGTGCTCGCATCTTGCTGCTGCTCTAGCAGCAGCGTTTGGT
TCTTGGATGGATAGGTTTCCTGATTTGGGTCCTCGCTACCAGTGACCGGCCCGCTTTGCG
CCAAGAGGGGGTGCTATTTTTAGCGCCCGCGTGCGCTGCTCTAAGCGCTCTGCCATATCT
GGCCTGCTTCTTGGACT

Homology of Contig U35_29482 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None