barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_22438_PI390587928Hv_44K_v2ATCTTTTTGCTCGGGACTCCGATTAAGGTGATTCCAATGCCCACGTCTTTGTCTTGTCAA552GeneList: yellowgreen
MasterList: Wall_associated_proteins_Function_Probe_Module



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.8391.8831.4851.2660.7290.820
Raw 112.367403.490264.587351.84369.86089.459



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC287796213e-25553 - 61210060 / 60plus
Harvest35U35_294836213e-25553 - 61210060 / 60plus



Contig Sequence (621 bp)

>U35_29483 621 Hv_44K_v2
CTCGAGGAGCTCTCCTGCCCTCTAATGGCTGCCATGCTTGTTGTAGGCTCCAGCTCAAAT
TGGAGCACCCCGGCCCCTTCCTCCCTACCTAGACCCTTCCAAAGAACCCCCTCCATTGCC
ACAAGCCTTTCCCCCCTTCGCCTCGTCCCTAGAGCAACCCAGGTATTGCCCCGAGCTTCG
GCCGATGCCGCCGTCCGCCACGCCCGAAGCCTAGCCGTCTCCAAGCTCCTCGGCGACCGT
GCCACCCTTGAAATGGCATGTGCCACCGGGAGCCCTCGCCGGCGCGCGTGGCCTCGCCTC
TGCCTCTGTTGCAGACGGGGGGAAGAAGAAGGAGGGAGGAGAGAGAGAAAGGGATAAGGG
GGGGGCCCGCTTGTAAGCCTGTAAGCGTTGGCCAGCCCCGGGCCCACGTGTTTTAAGTGG
AAGCGTGTTCTCAAGAATACGCTTTTGCTTCTGGAAAGCCTATTCTCCCCGGATGCGCGA
CCAGCTGCGCAGTCAGGGACCTGGTTGTGAATATTTCTTTTTCACAAAGGTCCGTGGCAG
ACAAACGCTTATATCTTTTTGCTCGGGACTCCGATTAAGGTGATTCCAATGCCCACGTCT
TTGTCTTGTCAAGACGTTCAT



Homology of Contig U35_29483 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None