- Probe CUST_22437_PI390587928
- Source Contig U35_29484
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22437_PI390587928 | Hv_44K_v2 | TTTACTCTGTGATCCTGGACCCAAAGAAATGGTGGGATCTCGCCCCAAAAAAGTTGGAAT | 288 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.441 | 1.538 | 1.135 | 0.949 | 0.402 | 0.532 |
| Raw | 2567.213 | 4418.757 | 2795.850 | 3772.030 | 538.849 | 787.921 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61487.1 | 1180 | 2e-24 | 605 - 664 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_40182.1 | 1030 | 8e-25 | 438 - 497 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC28780 | 361 | 3e-25 | 289 - 348 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29484 | 361 | 3e-25 | 289 - 348 | 100 | 60 / 60 | plus |
Contig Sequence (361 bp)
>U35_29484 361 Hv_44K_v2 CGGCACATACATCACGTGGCGATGGGGCAAGCTCCTGCGCACCGAGCGACCGGTCCGCGC CCTCCATGCCCGGCTCCGCCAGCTCGGCGCCGCCGAGGAGTCTCAGGCCGCTTTCGCTGC CACCCCACCTACTTCCCTGCAGCCACCGTCGACGGCGCCGACCGGGCCGGGCAAGCCCGC CTCCGCGCCGGGAAGAGTAAGGACCCTTAGGCAACTTATTGACTTGAAATGGTACGAGTT ACAGAACAATCCCTGCATCGTTCGAGATCGAGGCATTCCTTGCCTCTGTTTACTCTGTGA TCCTGGACCCAAAGAAATGGTGGGATCTCGCCCCAAAAAAGTTGGAATGGAACTCTATGT T
Homology of Contig U35_29484 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |