- Probe CUST_22431_PI390587928
- Source Contig U35_43780
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22431_PI390587928 | Hv_44K_v2 | TTTGATTTTCTGTCAGTTACCAAGTGATCTCAGATGTTTTGTTCTGTCTGAAATGGTTGA | 72 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.136 | 1.511 | 1.281 | 0.742 | 0.535 | 0.281 |
| Raw | 28.590 | 58.168 | 43.720 | 39.143 | 8.593 | 4.319 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_12547.4 | 1205 | 2e-24 | 1013 - 1072 | 100 | 60 / 60 | plus | ABC40846 |
| MLOC | MLOC_12547.5 | 1237 | 2e-24 | 1005 - 1064 | 100 | 60 / 60 | plus | ABC40846 |
| JLOC1 | JLOC1_8421.1 | 1235 | 8e-25 | 994 - 1053 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC40846 | 511 | 3e-25 | 73 - 132 | 100 | 60 / 60 | minus | ABC40846 |
| Harvest35 | U35_43780 | 511 | 3e-25 | 73 - 132 | 100 | 60 / 60 | minus |
Contig Sequence (511 bp)
>U35_43780 511 Hv_44K_v2 TTTTTTTTTTTTTTTTTGAAGGAAACCATGGATTTTCAGAATTACTCAGAAATACAATGG TTTTTAATTTTTTCAACCATTTCAGACAGAACAAAACATCTGAGATCACTTGGTAACTGA CAGAAAATCAAATAATTATTTGTTGCAACTGGATTTTCTCCTTACTACAAAATATAGTAC TGTATGTTCCTTAATCAAAAAGCTCCCTCCGGCTAGTAGTAGTTGCAATATCTTTGTTTG CTTGAACTCTGAACTTCCCATCTTCAGAAGCTGGCCGGGCAGCTATTTGGATTCTAACAC ATACACATCATCCAGAATTCCCGTGGAAAAGGTACGTGAGCAGAATCACACAGATATGAA TGAAACCATGGATTTTCAGAATTACTCAGAAGTACAATGCTTTTCAGTTTTTTCAACCAT TTCAGATAGAATAGAACATCTGAGGCTCTGAGCACACTTGGTAACTGACAAATAATTAGT TGTTCCAACTGAATTTTCTCCTTACTACAAA
Homology of Contig U35_43780 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |