barSeed - Barley Seed Development Database

Probe CUST_2242_PI390587928

Source Contig U35_2978

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2242_PI390587928	Hv_44K_v2	ATTTGTGTTTTTGTTTTGGGCCGGCTAGATGCATGTAACCTACTTTCAATAGAACCCAAT	740	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.207	2.199	1.138	0.883	0.560	0.644
Raw	1173.620	1773.101	825.082	992.309	223.872	279.860

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_103.1	942	6e-21	805 - 862	97	58 / 60	plus
Harvest21	ABC19982	808	3e-25	741 - 800	100	60 / 60	plus	ABC19982
Harvest35	U35_2978	803	3e-25	741 - 800	100	60 / 60	plus

Contig Sequence (803 bp)

>U35_2978 803 Hv_44K_v2
GGTGAGTACTTCTATAGGCACGTATCCACCACTCGGAGCAGGCGCTCCCGCCCAGCAACG
CCGCCGCCCGGAGCTACGCCGGCGACCTGTCCATAGGGAATCAATATTGTCAATTGGAGA
GGCTTGGAGCTGCTTCGGCATCCAGTAGAGCAAACAAGAAGGTCAAATTGGAAACATAAT
TTAATCCTTGGACGGACTTCTCATCTTGCAATGGAAGCCAAGTTCTTTCGGTTTCTGAAG
CTTGTTGGAGTTGGGTTTAAAGCAAGGACAGAGCGTGAAGGCCGCGAGTTGTTTCTGAAA
CTGGGCTACAGCCATGAGGTGCAGTTCACCGCTCCACCTGCTGTTCGCGTCTTCTGCTTC
AAACCCAACATAATATGCTGTACCGGCATTGACAAGCATAGAGTGCACCATTTTGCCGGA
GCTGTCCGATGCAGCAAACCTCCTGAAGTGTACAAGGGGAAGGGCATACTGTATATCGAT
GAGGTCATAAAGCTGAAGCCAGGGAAGAAGCAGCAGAAGAAGTAACACACGGGTAAACCT
CCCCATTTGACTTCCAGCATATTAAGATGTGCGTCACATTTGTGGTGCCGTGGATTTCAT
TTGGTTTTCTCGTGTCGGATTATGGCTAGCCCCAGTACCATGCTGGACTTCGTAATAATA
CTCCGTATGCTATGTGAATCATCTGGTGAGCATGTGCTGTATGACTTGCATACCGTGGGG
GCGAATCAGCACATTCAAACATTTGTGTTTTTGTTTTGGGCCGGCTAGATGCATGTAACC
TACTTTCAATAGAACCCAATGTG

Homology of Contig U35_2978 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51510.1	104	8e-57	protein\|ribosomal protein L6, putative, expressed
Brachypodium v1_2	Bradi4g05970.3	112	9e-60
Arabidopsis v10	None