barSeed - Barley Seed Development Database

Probe CUST_22419_PI390587928

Source Contig U35_43788

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22419_PI390587928	Hv_44K_v2	TGATCGATGAACACTACAACTCATATGATGTGTTGTTTTGTTTTTGGAGGGCCCGGTACC	-1	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.548	2.173	1.734	0.851	0.220	0.247
Raw	316.626	675.312	464.477	365.347	32.470	39.936

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC40857	625	2e-22	4 - 65	97	60 / 62	minus	ABC40857
Harvest35	U35_43788	625	2e-22	4 - 65	97	60 / 62	minus

Contig Sequence (625 bp)

>U35_43788 625 Hv_44K_v2
ATGGGTACCGGGNCCCTCCAAAAACAAAANCAACACATCATATGAGTTGTAGTGTTCATC
GATCAACCTAGATAAATGGTAGCAAGCAAGTTTTCCACAAGTCGCGCAGCGGTAAATGTT
AACAGGACCATGTAACACAACATTCAACAACCAAATGTCTAGCTGCATCGGGTCTCACAC
ATGTCACAGCGAAAGCGGTATGCAAAGATGCATCCCATATGCAGACGAACGCTAGGTGCA
GCACCCTAAGAGTACGTCTTGACGTTGATGTGCTTGACAGATCTTGCATTGGCAAGCAGT
ATAGCCTTCAACACGGGAAGTCTGTCCTCCTTTTCGGCGCAGTGGATCGTTATCTTCTTA
AGGCGTTCGGCTTGGAATGATATCCCCTCAGCCGTTCGAAGCGGCTGCTTTTGCTCTTCA
CAGTCAAACTTGAGCTTCAGATCAAGATTCTCAAGCATAGGAGAGTGCTTGAGGAAGCAA
GCTAGAGGAGCACATTTGTTGGAAAGACACCATTCACCAAGAATGAGACTTGTCAGACTG
ATGAACATTAGGCGCCTTGAAGCCATTCTATCGAATGCAACATGTCTCACTGGTGCTTGC
AGTTCTATGCTCTTGGCGTTTGAAA

Homology of Contig U35_43788 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None