barSeed - Barley Seed Development Database

Probe CUST_22418_PI390587928

Source Contig U35_29495

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22418_PI390587928	Hv_44K_v2	TCTGTTTGTTTGGTTTGTCAGCATGATCTGGTGATTAAAAGCCTGTTCCCTTTCTTTTAA	535	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.437	2.173	1.137	0.776	0.333	0.367
Raw	1422.270	1952.505	906.247	963.843	148.870	175.411

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16235.1	1546	6e-24	533 - 591	100	59 / 59	plus	ABC28802
JLOC1	JLOC1_11170.1	435	3e-24	322 - 380	100	59 / 59	plus
Harvest21	ABC28802	603	3e-25	536 - 595	100	60 / 60	plus	ABC28802
Harvest35	U35_29495	603	3e-25	536 - 595	100	60 / 60	plus

Contig Sequence (603 bp)

>U35_29495 603 Hv_44K_v2
GCCACGATGGCCGCCGCCGCCAGGTCGATGCTCCGCTCGTCCGCTTCTCTTCTCCGCGCT
GCTCCGGCGAGGGCCTCTTCCTCTGCGGCGCGACCGTCCCTTCGCCGCGCGTTGGGAGCG
CCCCCTCGCCTCCTCAGGTCGCCCGTCGAGGCGAGCTTCTGCGTGGAGTCGCTGCTGCCG
CTTCACAGCGCCACCGCCGCGGCGCGGATGACGTCTATGCTCGCCGTGCCTGGCCGAGGC
CTCGGGTGGCTCACGGAAGCTGAAATTGATGGAGTATGATGCTGACCTGCCAACGGAGCC
AGGAGATTACTAGTCTTTCAGGATGAGTTGACAAAGAAAGGAAGCATGCTTTTCTTTTTC
TGTATGTGAACTACGATGAAATTTTTAATAAATGATGTTTGATATTGCTTAAACTTCATT
CTCCCACCTTCATCTTCATTAACCAGAATCATTATGGTTATGTGATGAGAACCGTGCTAG
GGGTGGTAGAAGTTTGAATCGCTAGCCAAATGAATACTATGCTTGACCTTTTGTATCTGT
TTGTTTGGTTTGTCAGCATGATCTGGTGATTAAAAGCCTGTTCCCTTTCTTTTAAAAAAA
AAA

Homology of Contig U35_29495 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None