barSeed - Barley Seed Development Database

Probe CUST_22416_PI390587928

Source Contig U35_29496

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22416_PI390587928	Hv_44K_v2	GCCCCACAGGGGTCCGAACGGGTCCACGCTGCACGGGCCGTGCGACAGCCCCACGCTCAT	356	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66454.3	2614	2e-24	416 - 475	100	60 / 60	plus	None
MLOC	MLOC_66454.1	3071	2e-24	873 - 932	100	60 / 60	plus	None
JLOC1	JLOC1_43792.4	2686	8e-25	442 - 501	100	60 / 60	plus
JLOC1	JLOC1_43792.3	1754	8e-25	840 - 899	100	60 / 60	plus
JLOC1	JLOC1_43792.2	3084	8e-25	840 - 899	100	60 / 60	plus
Harvest21	ABC28804	416	3e-25	357 - 416	100	60 / 60	plus
Harvest35	U35_29496	416	3e-25	357 - 416	100	60 / 60	plus

Contig Sequence (416 bp)

>U35_29496 416 Hv_44K_v2
CGGAGCCGTGCGTGTTCGACGTCCGGGCGTACGGCGCGACGGGCGAGAGCACGGCGGACT
GACACCGAGGCCTTCCGGGCGGCGTGGAGGGCGGCCTGCGCCGTGGAGTCGGCCGTGCTG
CTGGTGCCGTCCGACGGTACCTTCACCATCTCCACCACCACCTTCTCCGGGCCGTGCAAG
CCCGGCCTCGTGTTCCAAGTGGACGGGGTGATGATGCCGCCGGACGGGCCGGACTGCTGG
CCACCGTCGGACAACCGGCGGCAGTGGCTGGTCTTCTCCAACCTCGACGGCCTGACGCTG
CGCGGCGCCGGCACCATCGAAGGCAACGGCGAGGAATGGTGGAACCTCCCCTGCAAGCCC
CACAGGGGTCCGAACGGGTCCACGCTGCACGGGCCGTGCGACAGCCCCACGCTCAT

Homology of Contig U35_29496 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g20020.1	486	3e-56	protein\|polygalacturonase, putative, expressed
Brachypodium v1_2	Bradi2g33437.1	499	5e-59
Arabidopsis v10	None