barSeed - Barley Seed Development Database

Probe CUST_22410_PI390587928

Source Contig U35_43792

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22410_PI390587928	Hv_44K_v2	ATTTTCATCAGGCAATGGCATTCGTCACCTGCCGTGATCGATCGATGGTTCATTAAAAAA	11	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.980	6.532	1.649	0.606	0.445	0.472
Raw	137.546	175.189	34.919	21.314	3.705	5.661

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56205.3	1975	9e-22	1597 - 1651	100	55 / 55	plus	ABC40867
MLOC	MLOC_56205.2	1895	9e-22	1568 - 1622	100	55 / 55	plus	ABC40867
MLOC	MLOC_56205.4	1952	9e-22	757 - 811	100	55 / 55	plus	ABC40867
JLOC1	JLOC1_36337.1	2601	5e-22	2281 - 2335	100	55 / 55	plus
Harvest21	ABC40867	506	3e-25	12 - 71	100	60 / 60	minus	ABC40867
Harvest35	U35_43792	506	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (506 bp)

>U35_43792 506 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATGAACCATCGATCGATCACGGCAGGTGACGAATGCCATTGC
CTGATGAAAATCTCTTCCGCTCGCATTTGATCAAACCCTAAAGCTAAAAGAAGAAAAAAA
TAAACAATCTCTCCGCTGCTGCTGCTGGATGGATGATGTGTTTCCCTCCTCTTCTCCAAT
GGCACACCTCGCTCTTCCACTCACAAGCACAAGCGTACGTACGTGGGCGCTCTTTCGTAG
GTATGATGGTGATCTAAATGCCATGGGATCACAGCCGAGAGTGTAATCCTTGCGAGTTGT
CTAATGTCTCTAGGAGTAGAGGAAGGAAACCACAAAAGGAAAAAGAAATCAACGACAAAG
AACAGATCAAAGGCACACCAGAGCTACCAATGCATGCGATGCGATGCGATCCTCGGAGAC
CCTCCCGGCCGGCCTAGGACTCGCTGGTGCTCATGCTCTCATGCCGCTCGCCGCCGCCGC
CGCCACCTACGTGTTGCTGCTGGCTA

Homology of Contig U35_43792 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None