barSeed - Barley Seed Development Database

Probe CUST_22409_PI390587928

Source Contig U35_43793

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22409_PI390587928	Hv_44K_v2	ATATGTCTATGGTGGTATGGTGGTGTCTCTTTTCTAATGGAAAATGTTGGGCCTAAAAAA	11	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.630	1.300	1.797	1.429	0.363	0.244
Raw	44.836	136.775	173.998	211.041	18.997	14.129

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC40872	555	3e-25	12 - 71	100	60 / 60	minus	ABC40872
Harvest35	U35_43793	555	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (555 bp)

>U35_43793 555 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGGCCCAACATTTTCCATTAGAAAAGAGACACCACCATACCAC
CATAGACATATCTTACACAAGCGTAGCCCACAGACGCTTCAGTGAAACAAAAGCTAATTA
CAAGCGGATATCGGCACCGCCGATGCCCCCCACCAAAACGCTACCAGGCCACCAGCATCA
CCATGAAACTACAGACTACTCATCCAAATCCACAGACTGCAAGTTCTGGACAACACCTCA
CAAGCTGGACTTGCTACTCGAACATCACTTTAGTGAGTCACCGTTCGTACCCTCGAGCTC
CCTCTTGACGATCTTGTCACCTCTTCATCTAGCCTCGGTATCTCCTGGAAAGCTTCCAGG
GAACTGGAAGCAAAGCTCTCCAGGGCCTCAAGCACCAGCCTCAGGTTCACGTGCACGCTG
CTCGCTTCGATGCAATGCGCCTCGTACGTTCGTATCGTCGGGCACCGCTGAAAGCTCTGC
TGCTGGCCCGGCACCAAGGCCAGCTTCCTGTTCAGCTCGTCGGCATCCTTGTTGATCTCC
ACCGCCTTCCTCTCC

Homology of Contig U35_43793 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None