barSeed - Barley Seed Development Database

Probe CUST_22399_PI390587928

Source Contig U35_10366

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22399_PI390587928	Hv_44K_v2	GAATCCATGTTCAAACACAGCACAGTTCTTCTCTAGAGTCTGATGGTCCTCTGCTCTAAA	587	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.525	2.742	1.191	0.768	0.323	0.433
Raw	479.461	801.233	308.677	317.437	46.123	66.299

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC36024	616	3e-25	548 - 607	100	60 / 60	plus	ABC36024
Harvest35	U35_10366	659	3e-25	588 - 647	100	60 / 60	plus

Contig Sequence (659 bp)

>U35_10366 659 Hv_44K_v2
CTTTACATGGTACACTCTTTCTGCTGCTGTGACTTACATGGCCGCAAAGCGGATAAAGGT
GAAGAAGGTGAGGCTATAGCAGGGGCGCAGGAGCGAAACCCAATAAAGCCTTTCCTCCAT
TGTGTAACTATTTATGAAGCTCAAGTTTGCAGCTGCTTCAGAAGGAGCGAGCAAGCGTTG
CGTCTGTAATCTCCCGCAACGATTCATTAAACCATTGTTTTCGCATTTGATATCGGGCAT
GGCTCAGCTGACTGAGGTCGGAGAATTACAGAGCTGCAAAAGTTTTGTTAGCGCACCATC
CACATCCAGGGAAAGGAACAAGACATTGCTAACTATCCCAGTTCTTTGTAGCATGTTTTT
TTGAACTTTATATTATTGGCGACTGTTGGCAGAGACATTGATGCGCTGGGTTGGCCCATT
TATGTAACTTTAAACGACAAGTCATTTTCGACCACCACCATCACCACTCAGCAAGACGGC
TGCTCCGAGGTCACTGAGCAGCAAAGCGAACAGGGTTTGTCCTGTCCGCTTTGGGAATCA
ATCCCCTTGTGATGGCTCTCGCGCCAGAATTCCTGCAGTGCTTTGCCGAATCCATGTTCA
AACACAGCACAGTTCTTCTCTAGAGTCTGATGGTCCTCTGCTCTAAAAAAAAAAAAAAA

Homology of Contig U35_10366 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None