barSeed - Barley Seed Development Database

Probe CUST_22389_PI390587928

Source Contig U35_22346

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22389_PI390587928	Hv_44K_v2	TATAAGGTGTCCTGTGCCGATATAATCGCCCTCGCCGCAAGAGAGTCCGTCTTCCAGAGC	404	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.010	0.537	2.299	1.921	2.221
Raw	11.066	19.486	1661.425	10911.053	3197.890	4018.293

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62582.3	1260	2e-24	552 - 611	100	60 / 60	minus	ABC17906
MLOC	MLOC_62582.4	625	7e-23	143 - 199	100	57 / 57	minus	None
JLOC1	JLOC1_40964.2	1202	8e-25	497 - 556	100	60 / 60	plus
JLOC1	JLOC1_40964.3	725	4e-23	461 - 517	100	57 / 57	plus
Harvest21	ABC16948	506	3e-25	341 - 400	100	60 / 60	plus
Harvest21	ABC16947	619	3e-25	405 - 464	100	60 / 60	plus
Harvest35	U35_22346	619	3e-25	405 - 464	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_22346 619 Hv_44K_v2
GCAAAGCAACACTCTTAACAAAAAAAAAGCAGTAGCTTGAAGGGTCGATCCATTCCATGG
CGAACCTCGGGGCGTTAGCCTCACTCGCCGCCATCATCGTCGTCCTCGCCGAAGTCGCCA
TCCTCTCCTCTTTCGCGGCGGCGCAGCTTCGGCCGGACTACTACGCCGGCGTCTGCCCCA
ACCTGGAGGGCATTGTCCGGGACTCCGTTAAGCAGTCCATGGCCAAGTCCCCCATCTCCG
CGCCCGCCACCCTCAGGCTCTTCTTCCACGACTGCGCCGTCATGGGCTGTGACGCGTCGG
TGATGATCGTCAGCCCGACCGGCGACGACTATTCGCTGAAGCCGGAGGGCTTCCAGACGA
TCCTGGATGCCAAGGCCGCCGTGGACAGCGACCCTCAGTGCCGTTATAAGGTGTCCTGTG
CCGATATAATCGCCCTCGCCGCAAGAGAGTCCGTCTTCCAGAGCGGAGGGCCGAACTACA
CGGTGGAGCTGGGCAGGTACGACGGGAAGATCTCGACGACGAACAACGTAACGCTCCCGC
ACGCCGACGACAACCTCGACAGCCTCAATGCCTTCTTCTCAACCTTGGGCCTCTCCCAGG
CCGACATGATCGCATTATC

Homology of Contig U35_22346 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48020.1	320	3e-83	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g33730.1	315	2e-85
Arabidopsis v10	AT4G30170.1	325	3e-57	Peroxidase family protein \| chr4:14762922-14764482 FORWARD LENGTH=325