- Probe CUST_22386_PI390587928
- Source Contig U35_22349
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22386_PI390587928 | Hv_44K_v2 | ACGCAGGTTGGATTTTGCCATTGCCATGGACTCCAGGATGTCCAAGAGCCCACCTTCGTC | 54 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.659 | 0.648 | 2.834 | 3.579 | 1.530 | 0.547 |
| Raw | 48.857 | 78.108 | 287.398 | 559.786 | 88.696 | 34.364 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_2838.1 | 804 | 2e-24 | 607 - 666 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_1695.1 | 720 | 8e-25 | 597 - 656 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC16788 | 515 | 3e-25 | 55 - 114 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22349 | 515 | 3e-25 | 55 - 114 | 100 | 60 / 60 | plus |
Contig Sequence (515 bp)
>U35_22349 515 Hv_44K_v2 CTCACCCACTCATTCTGCACAAAAAGCTCTGAGCTCTCGACGCCTCTCAAGAAAACGCAG GTTGGATTTTGCCATTGCCATGGACTCCAGGATGTCCAAGAGCCCACCTTCGTCCCCGCC CCCGGCGGCGGCGGCGGCGGCGCACGACGAGGGGGACGCGGCGGCGGCGGTGCGGGTCAC GAGCCGGCTGTACCTGCACAGGCCCGGGCCCGGCGCGGGGGCGCTGGAGAAGGACGCCGT GCTGCGCCGCATCCGCCACCGGAGGCGCGCCAACCGCCTCCGGGACACGCTGCGCTCGCT CCTCGTCCTGCAGCAGCAGCAGCAGGCAGCGCCGGAGCCGGAGGACGGCGAGCGGCCGGC GTGGCTCGACGACGCCTTCACGTCGCCGTAGCCGCCGAACCCCCCCGGACCTTCTGGATC AGATCTCCCTCTGCTCTCCGTGGTGCACACTCTGCCGCGTGCCGCTGCTGCCTCGTCGAC GGTGTTTCACGCACGTTCGAGGGTGACCACGAGCG
Homology of Contig U35_22349 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |