barSeed - Barley Seed Development Database

Probe CUST_22385_PI390587928

Source Contig U35_34320

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22385_PI390587928	Hv_44K_v2	TAACATCTGAAAATGCTGCTGAGCGATACGGTGTAACCAGACAAGAGCAAGATAAGGCTG	432	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.640	0.803	1.562	1.573	1.047	0.884
Raw	210.238	359.329	700.200	1066.165	253.140	236.936

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37671.2	1720	7e-23	674 - 733	98	59 / 60	plus	ABC02749 ABC02750 ABC43832 ABC49702
MLOC	MLOC_37671.1	1407	7e-23	603 - 662	98	59 / 60	plus	ABC02749 ABC02750
JLOC1	JLOC1_24412.1	1987	4e-23	597 - 656	98	59 / 60	plus
Harvest21	ABC02752	874	1e-23	509 - 568	98	59 / 60	plus
Harvest21	ABC02750	1767	1e-23	712 - 771	98	59 / 60	plus	ABC02750
Harvest35	U35_34320	770	3e-25	433 - 492	100	60 / 60	plus
Harvest35	U35_34162	749	1e-23	315 - 374	98	59 / 60	plus
Harvest35	U35_15093	1820	1e-23	731 - 790	98	59 / 60	plus

Contig Sequence (770 bp)

>U35_34320 770 Hv_44K_v2
TCTCAGAATCATGCGTTGCAGGTAGCATTTCAGTTTAACAGCTTACAGATAAGCTGGAAT
TTCAGGTTTGTAACAATGGCTCCCGTATCCACCCATCCGGAACCTCCACGGCAGCACAGC
TTATTGAATTTTCGTTACAGCTCCGGACTCTCAAACTCAAACACCAAGACCAGCTACAGT
TATTTGAGGGCACGGCACACCATCCGATCGCATTAGTACATTGGAAGTCTGTATAGGCTT
TGCTCACCAGTCTAGTCCTAAATTACTCGAGGTGAAGAGGTCTTCGACGTAGAGAATCAC
TTGTCCGGACGACCTGACGAAACTCTGCATTTGAGCCCTTGCCGAATTTTCATCTTCATT
CAGTTTTTTCAGGAGCTGCGACTTGGAAGGTAGGGCAGCGGCCGCTACAGGATTGTCTTC
TACCCATGGGAATAACATCTGAAAATGCTGCTGAGCGATACGGTGTAACCAGACAAGAGC
AAGATAAGGCTGCTGCTGAGTCTCATGCGAGAGCTGCTACAGCCACGGCTTCTGGAAAGT
TCAAGGATGAGATTATTCCGGTGCATACTAAGATCATTGACCCCAAAACTGGAGAGGAGA
AGAAAGTTGTGATATCAGTTGATGATGGGATTAGGCCTGGGACCACGCCATCTGGATTGG
CCAAGCTTAAAACAGTTTTTAAGAAGGATGGGACTACGACTGCAGGAAATTCTAGCCAAG
TGAGTGATGGTGCTGGAGCTGTTCTTCTCATGAAGAGATCTGTTGCGGTG

Homology of Contig U35_34320 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g57260.1	449	3e-54	protein\|3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed
Brachypodium v1_2	Bradi3g55420.1	462	4e-56
Arabidopsis v10	None