barSeed - Barley Seed Development Database

Probe CUST_22367_PI390587928

Source Contig U35_46308

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22367_PI390587928	Hv_44K_v2	TTCACCGCCCCCGCCCCGGAGGCCCCGGTGACCGAAGTACTGGATCTGGGGCAGTCGGAC	90	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67948.1	528	2e-24	277 - 336	100	60 / 60	plus	ABC00599
MLOC	MLOC_67948.2	1553	2e-24	277 - 336	100	60 / 60	plus	ABC00599
JLOC1	JLOC1_44914.1	1227	8e-25	277 - 336	100	60 / 60	plus
Harvest21	ABC46226	150	3e-25	91 - 150	100	60 / 60	plus
Harvest35	U35_46308	150	3e-25	91 - 150	100	60 / 60	plus

Contig Sequence (150 bp)

>U35_46308 150 Hv_44K_v2
GCTGCTGCCGCGCCTGGCGGCGAGAGGAGGAGCCTGTCCCGCGTTCCGTCAATGGCGCTC
GACCGGCTGGGGTCGTTCAACATGTCCCGCTTCACCGCCCCCGCCCCGGAGGCCCCGGTG
ACCGAAGTACTGGATCTGGGGCAGTCGGAC

Homology of Contig U35_46308 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None