barSeed - Barley Seed Development Database

Probe CUST_2235_PI390587928

Source Contig U35_2985

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2235_PI390587928	Hv_44K_v2	GAAGCTCAACCCGATAATGGCCAGACAAGTGTACCCAGAACAATTTGATTGGTAACCACA	1216	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.213	2.648	1.339	0.593	0.206	0.229
Raw	1104.206	1427.110	625.876	441.727	52.615	63.356

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360323	1357	2e-24	1203 - 1262	100	60 / 60	plus	ABC07649
JLOC1	JLOC1_39924.1	1250	8e-25	1147 - 1206	100	60 / 60	plus
Harvest35	U35_2985	1352	3e-25	1217 - 1276	100	60 / 60	plus

Contig Sequence (1352 bp)

>U35_2985 1352 Hv_44K_v2
TCCCCCGGCTGCAGAATTCGCCGAGGGGTCGACGAGACGCACCTGCCAGGTCCTACACGC
GCCGCCGCCTCCAGGATCCTCTGCCCCTCGCCGCCGCAAGGAACAGCACCACGCCGCGCC
GCCTTCTCCGGTTCTCCCTCCACCGCAGCAGGCAGCAGATTGGAACTATGGCCCTGGCTA
ATAAGCTTGGTGGTCTGCTCAAGAAAGCCACTAGCTCGAACCCGACTCTCTATCAGGCAA
TAAGATGCATGTCATCCTCGAAGCTCTTCGTTGGAGGGCTTTCGTATACCACAGACGAGG
GCAGTCTGAGAGATGCCTTTTCCCATTATGGAGAAATTATTGATGCTAAGATTATCGTAG
ACCGCGACACTGGAAGGTCTAGAGGTTTTGGCTTTATAACTTATGCAGCAGAAGAACAGG
CTTCATCTGCCATCATGGCCTTGGATGGAAAGGATCTACATGGACGCAACCTACGGGTTA
GTGCTGCCACTGAGAGGACCAGTGGCTTCCGTAATGATGGTGGTCGTGGCTTCGGAGGAG
GCGGTTATGGTGGTGGTAGCTATGGAGGGGGCGGTTATGGTGGCAACAGTGGTGGTGGTG
GTGGTGGCGGTGGCTATGGAGGAGGTGGTTATGGTGGTAACAGTGGTGACGGTGGCGGTT
ATGCCCCCTCTGCGGGCACTGATGCCTTCTCTGGAGGCAACTTTGCTCCTGCTGGCGGCG
ACAACTTTGCTGCCGGCAACTTTGGTAGTGACAGTGGCTTTGGTGGAAACCCAGCTGGCA
ACCATGGTGCTCCTGCAGGTTCCACTGGTGGTGATGAGTTCTCCCTTGGCACCCCTGGTT
CCAGCTTTGAGAGCCCCAAGAATGGCGATGACATGGACGACCTCTTCAAGGATGACGAGC
CTGACAAGTACGCCAGCAAGAATGTCTAGGGCTCCAGTCTGCATCTCCTTCTGCAAGTCC
CTAGTTATGTACCTTGGATAAGTGTGAGGTGAATGGTCCTCGAGACCAGAGACTACTTTC
TTGATGACTGTCTAGAGACCAAAATAACTTATGCAAGTACCTGCGTTGAGGTGACAATGA
GAATGCACTTTCAGTTTGCCTGATTTAAAAAAAAAAAAAAAATCTCTCTTCACAAATTAT
CCCTCAGCAGTGATGGTTTTCTGGGTATCATGTTTGGAACCATTAGTTTTGTGGTTCCAT
CTTCATCAACCTACCTGAAGCTCAACCCGATAATGGCCAGACAAGTGTACCCAGAACAAT
TTGATTGGTAACCACAAGGANTTATATTGTTTTCTGTCAGTATATTTTATAGGTTTACTC
GGACTGTATTTTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2985 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None