barSeed - Barley Seed Development Database

Probe CUST_22359_PI390587928

Source Contig U35_22358

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22359_PI390587928	Hv_44K_v2	CCTGCTGAAAATAGCTCTTCGTCTGTAAGTTACACTTGTAAGAAAAATACACACATATTC	991	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.544	0.409	0.827	1.761	1.295	1.479
Raw	106.239	120.369	223.743	722.272	191.589	240.724

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51377.1	1765	2e-24	1685 - 1744	100	60 / 60	plus	ABC17933
MLOC	MLOC_51377.3	627	2e-24	542 - 601	100	60 / 60	plus	ABC17933
MLOC	MLOC_51377.2	1724	2e-24	1591 - 1650	100	60 / 60	plus	ABC17933
JLOC1	JLOC1_32820.2	1579	8e-25	1461 - 1520	100	60 / 60	plus
JLOC1	JLOC1_32820.1	1709	8e-25	1591 - 1650	100	60 / 60	plus
Harvest21	ABC17933	1094	3e-25	992 - 1051	100	60 / 60	plus	ABC17933
Harvest35	U35_22358	1094	3e-25	992 - 1051	100	60 / 60	plus

Contig Sequence (1094 bp)

>U35_22358 1094 Hv_44K_v2
CACCTCCGTGTGGCTGCAGTACTGGCTGTTCGTCTGGGGGTACAACGGCGTGCCCGCTCT
CAGCGAGGACGTCCAGCTGAGAAGGAGGTCAACCGCGGCGCTGGCGCTGGCCGCGGACGA
GGAGGTGCAGAGGCACGGCCAGGACGCGTCGGATTGGAAGGTGGGTGTTACGGAGCGGCT
CTCCATCCTGCCCTGCTGGGAGTCCTGGGCTGTGTACATGAGGCAGGAGGTGATGCTGCC
AGGGGTTGCTCTAGCCATCCTCTACTTCACTGTATTAAGCTTTGGTACGCTGATGACTGC
AACTCTGGACTGGAAAGGCATCCCTGCGTACGTGATCAGTCTCGCACGGGGGTTCAGCGC
CGTCGTCGGGATCGCGGCAACCTTGCTGTACCCGGTGGCGCACTCGTGGGTGTCCACGCT
TCGCACAGGGCTCTGGTCCGTCTGGATGCAGTGGTGCTGCCTGCTGCTTTGCGTGGGCTC
CATCTGGGTGAGCGACGGCGTGGCGTCGGCGTGGGTGCTCATGGCCGGCGTCGCGGCATC
GCGCCTTGGCCTCTGGATGTTCGATCTGGCGGTCATGCAGCTGATGCAGGACGGTGTCCC
GGACTCGGACCGGTGCGTCGTCGGAGGGGTTCAGAACTCGCTGCAGTCCATGTTCGACTT
GCTCACCTACATCATGGGCATCATCGTCTCCGACCCCAGGGATTTCAGCGAGCTGATCAT
GCTGTCCTTCCTGCTGGTGACCTGTGCTGCGTTCATGTACACGCTGCACGTCTACCGCGT
ACGGAAGCACCTGTTGCACCTGGACAAGATCTTCGCCAAGATGGGTTGGTGTGCAACCTT
CCAATAGTGGCCAGAGCATGTTGCCAATTTAGCTCGTGGTTGGTCATCTTCTTCAGCCTT
CCTTTCTTTCTGGGTGTATATAGTTGCAGGATAAGGGCCTCTTTGGATTAGCGTTTTTAT
TTCAATTACACCCGGCCCATTGTTTTGACTTCCTGCTGAAAATAGCTCTTCGTCTGTAAG
TTACACTTGTAAGAAAAATACACACATATTCAATTACATCGATTCAAAGTACGGCCTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_22358 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g36450.1	485	6e-136	protein\|ferroportin1 domain containing protein, expressed
Brachypodium v1_2	Bradi1g37907.1	505	7e-160
Arabidopsis v10	AT5G03570.1	512	4e-101	\| Symbols: ATIREG2, FPN2, IREG2 \| iron regulated 2 \| chr5:904514-906593 FORWARD LENGTH=512