- Probe CUST_22358_PI390587928
- Source Contig U35_22359
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22358_PI390587928 | Hv_44K_v2 | TAGTTTCTGGTAGTACGGTGTCTATGTAACACGGTTGGTGAGCTGTGCATACGTTGTTTC | 682 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.432 | 1.584 | 1.105 | 0.764 | 0.284 | 0.359 |
| Raw | 1117.950 | 1928.356 | 1181.653 | 1283.215 | 170.972 | 232.859 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_37286.3 | 1437 | 2e-24 | 1338 - 1397 | 100 | 60 / 60 | plus | ABC17774 |
| MLOC | MLOC_37286.1 | 1497 | 2e-24 | 1398 - 1457 | 100 | 60 / 60 | plus | ABC17774 |
| MLOC | MLOC_37286.2 | 1494 | 2e-24 | 1395 - 1454 | 100 | 60 / 60 | plus | ABC17774 |
| JLOC1 | JLOC1_24132.4 | 1557 | 8e-25 | 1318 - 1377 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24132.3 | 1554 | 8e-25 | 1315 - 1374 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24132.2 | 1637 | 8e-25 | 1398 - 1457 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24132.1 | 1676 | 8e-25 | 1437 - 1496 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17774 | 820 | 3e-25 | 683 - 742 | 100 | 60 / 60 | plus | ABC17774 |
| Harvest35 | U35_22359 | 820 | 3e-25 | 683 - 742 | 100 | 60 / 60 | plus |
Contig Sequence (820 bp)
>U35_22359 820 Hv_44K_v2 AAAGAAGCCCAAGCTAGAAGATAAGCAGCCACCGCTCTCACCTGCTTCAAGCATAAAAAA TTCTGACGGCAACGATGATGTAGGGAAGGCAAGCCCAGGCTCTCCAGATCAACAGCAACA TGCCCTGGAAAGCTTGGATTCTGGCCATCAAACTGGAGACGACTGTATGAAAGATGCTGG GGACTCATCTCCTGAGATGGCATTAGATACAGCTAAACCAACCGACTCTGAGCCTTCTAC AGCAGGATGAGTCATTTTTCTCCATTAATTGGCCTCAACCCGGTCTTTCCTTGCAGCTAG AAGGATAAGGAATCACGTTTTGGCTCCGAAGAAGGCTAGATTCATATGCTAAACTTCAAG CCCGCAAGCTTTGGGCACATCCACATATATCTTGGATGTGATATCGACTGAACGTGTAAA ATTGATCTTCAGGAATAGATTCTGAAGCTGAGAATGAGCGCAGTTTCTGTCGAGGAACAT AGGAATTTTTGGTTGCATTAGTCTAGTGGACAAAATGACATTTCACAGGGGCACTGAAAA CGTGCCCTTTGCTAGAAGCTTCCACCCATGTGGAATGGAAGGAAGAGAAGCTATTATCTT GTAAAACTGCCGGTAGAGATTAGAATGGTTCACAACAGCTTGCTTTATTTTGCAAGTCCA AGTTAATGGTAGTCTAGCAATCTAGTTTCTGGTAGTACGGTGTCTATGTAACACGGTTGG TGAGCTGTGCATACGTTGTTTCCCTGGTGTGCAGCTCTGGTGCGTCCCGGCGCATGATTT GGCGATTTCAATTGGTTCATATCAAAAAAAAAAAAAAAAA
Homology of Contig U35_22359 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |