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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_22346_PI390587928Hv_44K_v2TAACCAGTACCAGTCAGCACTTGTGTTCTGTCATTTATTAACCTCGTTTACTCGAAAAAA11GeneList: tan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.3770.8321.3671.5731.0161.094
Raw 75.245260.553380.876696.253154.700183.194



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC161826563e-25586 - 64510060 / 60plusABC16182
Harvest35U35_463146573e-2512 - 7110060 / 60minus



Contig Sequence (657 bp)

>U35_46314 657 Hv_44K_v2
TTTTTTTTTTTTTTTTTCGAGTAAACGAGGTTAATAAATGACAGAACACAAGTGCTGACT
GGTACTGGTTATCATCCATTTTACATAACACTTTGTATAATTTTTCCTTAGTGAAAGTAA
CCTGTCTAATGTCCTGTGAATTGTGATCCACAACCACAAGGGGAGCAGAAATGCCTACCT
AGCTATGTATGTATCTACAGCTCACCCCTGCGGCCTGCTTTGTACAGACCATATGATTCT
CTTGTTTCTATATATAGAAAGGGAAGTAGTAACCAAAAATAATAATAATTGAAAAGCATG
ATAGCTTTGAAAACTCTGTAAGCTGCCATTTCCAGATCCATTTCCATCCATTGCCTCTAG
GCGTCTGGAGCATGCTGCCGGAGCGGCTGGTGCTCGTTGTTCTGGCTGTCGAGCGGCATG
TACTGGGACATGATGGCCATGATCTCCGAGTCCATGTACGACCTGAGCCTGTACTTGTAG
AAGACGAAGCCGGCGACCCCCAGGCCGGCGGCGCAGGACACGGCGAGGACGGCGACGAGC
CAGCCGAACCTGGACATGCTGTTGGCCACGCACACGTCCTCCCCTCGGATGTAGACCTGG
TTGCCCCTGCACCCGCACTCGTAGCTGCCCCAGGTGTTCTTGCAGCGGCAGTCCGGG



Homology of Contig U35_46314 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os06g45380.25013e-53protein|vacuolar-sorting receptor precursor, putative, expressed
Brachypodium v1_2Bradi1g31820.16265e-57
Arabidopsis v10None