barSeed - Barley Seed Development Database

Probe CUST_22344_PI390587928

Source Contig U35_46315

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22344_PI390587928	Hv_44K_v2	TGTATAAATGCTACTCCTGTTGCTTCATTCGATAGGCAAGATGCAGACCGCCTTCTTTTC	389	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353915	3021	2e-24	1640 - 1699	100	60 / 60	plus	ABC09318 ABC10947
MLOC	AK371695	3078	2e-24	1697 - 1756	100	60 / 60	plus	ABC09318 ABC10947
MLOC	MLOC_66426.1	1892	2e-24	479 - 538	100	60 / 60	plus	ABC09318 ABC10947
MLOC	MLOC_66426.2	2803	2e-24	458 - 517	100	60 / 60	plus	ABC09318 ABC10947
JLOC1	JLOC1_43770.1	3886	8e-25	2408 - 2467	100	60 / 60	plus
Harvest21	ABC46242	452	3e-25	390 - 449	100	60 / 60	plus
Harvest35	U35_46315	452	3e-25	390 - 449	100	60 / 60	plus

Contig Sequence (452 bp)

>U35_46315 452 Hv_44K_v2
GTAAACTTCAGAATCGAATCAGTGCTTCTCCACCGCCTCTTGAAGCATCATCTGTACCAC
GTGGAATGGTTACCATGCGTTGCGATATGACTACTTGCAGTTCTTCTCATGTGTCACTTC
TTGTTTCTGGGAGTGCACAAACTTGTTTTGATGACCAGCTTCTAGAAAGCCACATAAAAA
ATGAACTCATCGAGAAGAGCCAGCTAGTCCGTGCACTACCGAACAGTGAGGATAAGCTAT
CATCGACTGAGCCTTTCACTTCTATGTCCACAGCTTGTGGGGCTTCTACCTTTGAAGTCT
GGATGACCCTTCCTAAGTGGGCAGCACAGGTTTTGAAGCATCTAGCACCAGAAATTTCAT
ACAGGAGCCTAGTTGCACTTGGAGTTGGTTGTATAAATGCTACTCCTGTTGCTTCATTCG
ATAGGCAAGATGCAGACCGCCTTCTTTTCTTT

Homology of Contig U35_46315 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g26390.2	667	7e-80	protein\|AT-rich interaction region, putative, expressed
Brachypodium v1_2	Bradi4g31016.1	769	6e-81
Arabidopsis v10	None