barSeed - Barley Seed Development Database

Probe CUST_22343_PI390587928

Source Contig U35_10388

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22343_PI390587928	Hv_44K_v2	AAATATGAGGGCCGATTCGAAATCCTGTGCCTCTCTGGATCATACCTTGCTATAGATGAC	793	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69560.1	966	7e-23	672 - 731	98	59 / 60	minus	ABC18823
JLOC1	JLOC1_46096.1	1089	4e-23	185 - 244	98	59 / 60	plus
Harvest21	ABC20080	914	3e-25	794 - 853	100	60 / 60	plus
Harvest35	U35_10388	914	3e-25	794 - 853	100	60 / 60	plus

Contig Sequence (914 bp)

>U35_10388 914 Hv_44K_v2
GCAAAACCAACCCTACTCATCTTGTCTAGGGTTTTAGCAAAGCAAAGCGTCCCCATCTTG
GAGACTTGGAGTTGGGCCTCCTCACCCACACCCGTCTCGCCGGAATCCATCCATGCCGCG
CCGGCGATTCTAGCCAGCTAGGGTTTCTCCTCCTCCTTCGCCCGCAGTCGGATGAATGGA
CTCCACCGACTCCTCCTCCCTGGCGGCCTCCTCGGGCGCCGCCTCCCCCTACTACGTCCA
CCACCGCCCCTCCCCATCCCCATCCACCGCCGCCTTCCCCTCCCCTCCCCCTCCCCCTCC
CCCTCCGCCGCCTGACGCCTACCACCAACACCCGCTCGACGTCTTCTCCTTCCCCATGGG
CCCCGACCCCCACATTCCCCACGCCCCCGCCACCGCCACCGCCTCGCAGGACGACCTCGG
CAGGAAGAAGCGCGGCCGCCCCCGCAAGTACAAGCCCGACGGCTCCGGGCTCATCCCCAC
GGCGCCGTCTCCCTGCACCGCCATCGTCCCCGTCACCCCCGGCTCCGGGGGTGGACCCTC
CTCCGAGAAGCGCCGCGGCCGACCCCCCGGCTCCGGCAAGATGCAGCAGCTCGCCTCCCT
CGGGAAATCTTTCCTCGGCACCGTCGGCACCGGGTTCACTCCCCATGTCATCATCATCCC
ATCAGGAGAGGATGTCGCAGCGAGGATAATGTCCTTCTCACAACAGGGCCCAAGGGCGGT
CTGCATCATGTCAGCATCAGGGGCTGTCTTCACAGCAACCCTTCATCAGGATGCGGGCTC
CGGCAGCGTATTTAAATATGAGGGCCGATTCGAAATCCTGTGCCTCTCTGGATCATACCT
TGCTATAGATGACGGCGCTTCACGCACTCGGAATGGAGGGCTATGCATAGCGCTGTGTGG
CGCTGATCACAGGG

Homology of Contig U35_10388 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g57820.1	395	2e-56	protein\|AT hook motif domain containing protein, expressed
Brachypodium v1_2	Bradi1g29110.2	284	1e-64
Arabidopsis v10	None