barSeed - Barley Seed Development Database

Probe CUST_22342_PI390587928

Source Contig U35_46316

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22342_PI390587928	Hv_44K_v2	TACAGCTAAAACAGGAACAAGTTGGTGTTTATCAACAGGCATGAATTGGCCCTAGAGAAA	14	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.835	1.979	1.210	0.910	0.532	0.421
Raw	120.944	199.949	109.825	123.443	26.911	23.460

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49042.1	534	3e-22	65 - 124	98	59 / 60	minus	ABC46244
JLOC1	JLOC1_31426.1	532	1e-22	65 - 124	98	59 / 60	minus
Harvest21	ABC46244	658	3e-25	15 - 74	100	60 / 60	minus	ABC46244
Harvest35	U35_46316	658	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (658 bp)

>U35_46316 658 Hv_44K_v2
TTTTTTTTTTTTTTTTTCTCTAGGGCCAATTCATGCCTGTTGATAAACACCAACTTGTTC
CTGTTTTAGCTGTACTTGGATTGTGTTCCTCTGCCAATCATTTCCTTGTACTATTGATGT
TCCACCATAAAAATAGGGAACTCGAACTGTTAGTATCAGAATATTCTTAACAAGAAGTTG
AATTTTATTTTCCTGCATTAGTTTCTTATTAGTAAACTGAATGTTTTGCGGAGCTTGCTC
TGGAAAAAGGCTGGCTGTTTACTATGCATACAACTTGGACTACCCACTGTTAAATTCCTT
GAAAGCTTCAGGTCCAATTAATGGTTGCCCATGTCTGTCAGCTTAAGATCAGGCATGTGG
CTCATGGTCCTTAATCCTAGTGCCTTGAAAGGATATTATGTAGTCTTGCTGGTATTAGGT
AGCATTGAGGTGTGCAGTTAAGGGCACAACAGCAACTTAGGACCAGCTGAAATGCCACCC
ACAGCTAGTTTTTTTACTTGGTATTTGATCTTGCAGGTTTGTAAGAGAAAGAAGATAATA
GAGCTTCATCTATGAAGTGACCTCCTTTCTTGCGAAGCATACATCTGACCTATTTCTTTG
GGGAATGGTGATGTGTCTCATTCCATCAATGCAATGATATGTGTTTGGAGATATTTTT

Homology of Contig U35_46316 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None