barSeed - Barley Seed Development Database

Probe CUST_22341_PI390587928

Source Contig U35_10389

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22341_PI390587928	Hv_44K_v2	CTGTGAGTTTTGTGAACTAGCGACCTTGATAATATCATATCTTTTGTGGGGGAGAAAAAA	1650	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.318	1.465	1.053	0.876	0.379	0.461
Raw	2128.117	3668.400	2342.400	3090.593	458.808	613.878

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC19428	1721	3e-25	1651 - 1710	100	60 / 60	plus	ABC19428
Harvest35	U35_10389	1721	3e-25	1651 - 1710	100	60 / 60	plus

Contig Sequence (1721 bp)

>U35_10389 1721 Hv_44K_v2
GACATGAAAAAACAATTAAATGAGTGTCTTCGTGAAAAGAACGAAACCGAGCTCAGACTA
CTGGATTCTACTCCTTTTTCTGTTCAGCGTAATCCAACAGATGATCAGAAGTTAATAAAA
CTTCTGCAAGAGGAGCTCCGCAACTATGAAAAAGAAGTGCATGAAGCTAGAAGATTAAAA
TCTTCCCACACAAATTTTGAGCTGCTAAGTGAAAAGCTGTTGGAGGAGCAGAGTCGAAGG
AAACGAGCCGAAACAGAACTATCTAAGCTGCAAGAAATCGAAGCTAAAGCACAGAAGTTG
GAGCTGGAATTAGCGTCATGTACATCATTACTTGGCAACATGCCTGATGTGTCTTCTTAC
AGCAACATTGCAGATTTGCAAAGGCAAGCATTGACAGACTTGAATAAATTGGGTGAAGTA
ACATCACGGTTGAAAGAATTGGAGGTTACGTTGGAATTTGCTGAGATCAGCAAGCAACGT
GCAGAAGGTGAAGCCACCTTTGCCAAAGAGAGAGCTGAAAGTGCTAGCAGGGAGGTCAAG
CGGCTTGAACTTCTGCTTACTGCAGTGAGTGAAGAAAGAGATAGATTACGAAAAGATCAT
AATATGTTATCTAACCAAAAAACTAGGGATGGAGATGACATGTCATCCAAGAAAATGGAG
TCAGAATTATCTCAAATGGAAAAGGTAGTAAGAGAACTAGATAACACTCTACACGAGCAG
AGAGAACTAATTAGTCAACAACACGCGGAGCTCAATCTAATGAATGAGAAATTGAGTATT
GAAGCAAGAAAAGCAAAATCATTGGAGCGAGAGGGAGATCAACTGCGTTCTCAGGTGGCA
TTACTCGAGTCTAAGCTGGGTCATGGGGATTACTCTGCCTCAAGCACAAAAGTACTTCGT
ATGGTGAATACGCTTGCAATGGACAGTGAAGCAAAGGAGACAATAGAAGCACTGCAAGCT
GAGTTAAAGAAAACGAAAGAGAGGCTGCAGGCAATCGAAGAACTAAAAGGGCAAGCTGAT
GCTGGAACTGTGGTAGATGCAAATGTTGCTGAAAAGCTAGCACAGCTTAAAAATCAAGTT
GCCACACTAGAGAAACGTGAAGAAAGATACAAGGCAGTGTTTCTGGAGAGGATCTCAGTC
TTCCGAAAGGCTTGTTGCTCGCTTTTTGGTTATCAGATAGTGATGAATGATGAGCAGCAG
CCAAATGGGATCCATGTAACACGATTTACTCTGCAATCAGTATATGCCCAAACCGATGAT
GAAAAACTCGAGTTTCTCTATGAATCAGGAAGCACCAATATAGTGGTCAATGGCTACACT
TCTCAACATGAGATTGCTCAGCAGGTCGATGTTTTCATAAGAAAGATGAAATCCATCCCA
GCCTTCACTGCTAACCTGACAATGGAATCCTTCAACAAGAGAAGTATATGCTAAGGGCCA
AAATGAGTGAGAAATCATATTCCTCTATTTTATTGTAGCATGCCCGCCAAATCGCAACGT
ATCGGCAGTTAACAGAATGTGCTCATGAAACCTATCCAGATGAACAAGTGGAGTGAAAGG
CTGGTGCTGAGTATGGTACTATCAGATGGATGCCATTTTAGTTCGAACAAAGTAAATATG
AGCGCATACATTGTAACCGAGAGCCGAAACCTGTGAGTTTTGTGAACTAGCGACCTTGAT
AATATCATATCTTTTGTGGGGGAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_10389 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65580.3	721	0.0	protein\|mitotic checkpoint family protein, putative, expressed
Brachypodium v1_2	Bradi2g16210.1	725	0.0
Arabidopsis v10	AT5G49880.1	726	7e-160	mitotic checkpoint family protein \| chr5:20282305-20287775 FORWARD LENGTH=726