barSeed - Barley Seed Development Database

Probe CUST_22339_PI390587928

Source Contig U35_22360

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22339_PI390587928	Hv_44K_v2	TTATTTTGTGTACCCAGTGGTGAAATTTTTGCTGGCTTCAAGATTGAACTGATTTTTCTG	610	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.569	1.444	0.944	0.909	0.523	0.589
Raw	959.069	1337.257	803.813	1202.430	248.908	296.194

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4818.1	1733	2e-24	85 - 144	100	60 / 60	minus	ABC21671
JLOC1	JLOC1_3052.2	1731	8e-25	1576 - 1635	100	60 / 60	plus
JLOC1	JLOC1_3052.1	1741	8e-25	1586 - 1645	100	60 / 60	plus
Harvest35	U35_22360	818	3e-25	611 - 670	100	60 / 60	plus

Contig Sequence (818 bp)

>U35_22360 818 Hv_44K_v2
TTTCTCAAGTGACATATCACTAGCAACAAATAAAGAGCTTGCTTATGCCCTAGCGTCACT
GCCACCCTATGAAGTACCATTTTCAGACGTTACAGTTATGCATCTTCATTGCGAGGTACC
CCGTACTGAGATATGGCATAGTGTGAATGCAACCATAGTTGGCTTGGCAAGTAGTTGTGA
CACACCTGCGACCGCCCATGCAGTTCCTTGGTGTGTTGGGCTTGGTATTGTCAGAGGCGT
CGATGTGCAAAGAGGCCTGTTATATGTTATCACTCCTGTTGATGTTCAACATCTTCAAAG
CGTAGATCTGCTGCTGCAGGGTCTCATTGAGATTCCGAGATCTGTTCTGCAGGTGAAGGG
ATGCGAGTCGCCGTACATGTCCACCAATGTGCGGGACAAGATAACTGGGAAGGATCTGTA
CGCGAGTAATCTCAACAGCCCACTGTCCAGACAGGATGACGGCGATTCTGATTCGGGCGC
AGATACCATGTAAAACTTGCAACATGTTCGTCTCTTCATTTTCGTTGGAGATGTAATATG
GCGCTCGGTCGGCCTGACGGTCGGCCTGACATGTCGGGGACACAACATGAAATTTTGATA
GCGGACCATCTTATTTTGTGTACCCAGTGGTGAAATTTTTGCTGGCTTCAAGATTGAACT
GATTTTTCTGCTTTGTGGTATGGCTGTGCCCTGATACTTTGTAACAGAAGTCGGGGTACA
CATTCCTGGCCAAAAAAAAACTGAAATCACGTTTAGATGTGCGCTGTTTTGGTATGTCAG
CGGCCGCTCGAGCATTTTGTAAGGGCNCCAATTCGCCC

Homology of Contig U35_22360 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g08850.1	380	4e-64	protein\|expressed protein
Brachypodium v1_2	Bradi2g05357.1	437	1e-86
Arabidopsis v10	None