- Probe CUST_22336_PI390587928
- Source Contig U35_22364
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22336_PI390587928 | Hv_44K_v2 | GCCGCCATGATTTTTGGTAGATTTAATTTTTGTTGGAACCTCTTTTCATTTTTGCTGGAA | 436 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.170 | 0.228 | 0.569 | 1.586 | 1.832 | 3.207 |
| Raw | 5.477 | 12.949 | 31.292 | 132.318 | 54.643 | 103.437 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_18398.1 | 1081 | 2e-24 | 622 - 681 | 100 | 60 / 60 | plus | ABC18348 |
| JLOC1 | JLOC1_12733.1 | 839 | 8e-25 | 619 - 678 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC18348 | 538 | 3e-25 | 437 - 496 | 100 | 60 / 60 | plus | ABC18348 |
| Harvest35 | U35_22364 | 538 | 3e-25 | 437 - 496 | 100 | 60 / 60 | plus |
Contig Sequence (538 bp)
>U35_22364 538 Hv_44K_v2 GCACGAGGCGACGCCGACCATATTTTTTTGCAAGCTCCGCAAGCCCCATTCTCGCAACCC CCTCACATACTAGCGCCGGGTCTCATGGTGCATGAGGCGGTTGCCATGAGAGGTGCGTTG GAGATGCGTATGGGGCGGCGATGGGGGACATACGACGAATACGACGATGTTGCAACCCCG CACGTGACAGAGATGCACCCGAGGGCGGCGATCTGCTAAGCAACCGTGGCGAGCTGCAAC GGCGGCCGCAACAAGCTGGACAGTCATCAAATTTTGCTACAACGGCCAGCTGGATCATTT GTTTTTGCTGGAACCACATATATTTTTTGCTGGAACCTTATTTCAATTATGCTGCAAACT GAGAGATATGGTGGTGTGTTGCTGCCATGATTTGTGTTTTGATTTTCCTGCAATTCAAAA GGATGGTGGCGTGGTTGCCGCCATGATTTTTGGTAGATTTAATTTTTGTTGGAACCTCTT TTCATTTTTGCTGGAATCACATATATTTTTTGGTGGAACCTTAAAAAAAAAAAAAAAA
Homology of Contig U35_22364 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |