barSeed - Barley Seed Development Database

Probe CUST_22331_PI390587928

Source Contig U35_22369

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22331_PI390587928	Hv_44K_v2	GAGGAAATGTACACAGATCGTTTTTGTACACTACATGAGAATGGTTTCTTTGAATTGATG	481	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.503	1.488	1.164	0.894	0.393	0.466
Raw	1391.880	2161.946	1490.700	1795.347	275.299	358.243

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61576.2	2810	3e-21	2702 - 2761	97	58 / 60	plus	ABC17285
JLOC1	JLOC1_40238.1	3544	2e-21	2829 - 2888	97	58 / 60	plus
Harvest21	ABC17285	593	3e-25	482 - 541	100	60 / 60	plus	ABC17285
Harvest35	U35_22369	593	3e-25	482 - 541	100	60 / 60	plus

Contig Sequence (593 bp)

>U35_22369 593 Hv_44K_v2
GAATCATAAGTTCAGTTTACAGTACTGCATCTGGGACCGTTTTAAGGAGCTAGATGAGAT
GGAGTTGAATCGGTCCATGAACCTGGCAAAACTAGTTGCAGAGATGCTCGCAAGCTTCTC
CTTGTCGCTGGCAACACTGAAGGTTGTCAACCTGGCAAACCCTGTGGAGATGACCCCGAA
AAAAATCATGCATTTCCGGATGATGTTTGAGACCTTGATGCAGAAAGAAGACTCGCTTAT
GTGGAACGTCTTCACCCGTATCGCCGGGAACCCAGAGCTCGAGCTCTTGAGAGATGGAAT
CGTGATGTTCATCAGACAGCATGTGATCGCCAAGGACGCAGGGAAGGAGTTGTCTGGCAA
ATTCAAGATCGCCAAGAAGGCGCTTGATAACTCTGCTGGAATTTTGATGTAATATGCCCG
TCGTGTGTCTTCCACGTCTCGGCTACGTGACACGAGGGCTCTCAGTTTTGTTTGGTATTC
TGAGGAAATGTACACAGATCGTTTTTGTACACTACATGAGAATGGTTTCTTTGAATTGAT
GATGCAAATTTGTAGTGTTCCAGAAAATCAATGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22369 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05450.1	428	5e-68	protein\|MA3 domain containing protein, expressed
Brachypodium v1_2	Bradi3g49040.1	744	5e-75
Arabidopsis v10	None