barSeed - Barley Seed Development Database

Probe CUST_22324_PI390587928

Source Contig U35_10393

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22324_PI390587928	Hv_44K_v2	AACTTCAGCAGATACCCCGATGTCTAGAAGAGCAGCAATGCTTGGAGTAAGTGTAGATCA	771	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.098	0.676	1.539	1.530	0.854	1.055
Raw	304.723	3365.956	6341.023	9876.127	1942.157	2617.583

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365248	2891	2e-24	2683 - 2742	100	60 / 60	plus	None
MLOC	MLOC_61591.2	2816	2e-24	1502 - 1561	100	60 / 60	plus	ABC09679
MLOC	MLOC_61591.1	3414	2e-24	1975 - 2034	100	60 / 60	plus	ABC09679
JLOC1	JLOC1_40251.1	4439	8e-25	1820 - 1879	100	60 / 60	minus
JLOC1	JLOC1_40250.2	4437	8e-25	2307 - 2366	100	60 / 60	plus
JLOC1	JLOC1_40250.1	4161	8e-25	2031 - 2090	100	60 / 60	plus
Harvest21	ABC20836	831	3e-25	772 - 831	100	60 / 60	plus
Harvest35	U35_10393	831	3e-25	772 - 831	100	60 / 60	plus

Contig Sequence (831 bp)

>U35_10393 831 Hv_44K_v2
GGCAAAACGACGCTCCTGCACTTCGTCGTCGAGGAGATCACCAAGTCTGAGGGTGCAAAC
ATTGTATCCACGAGCCAAACGAAAGACAAGGTGAGCGCCGTTGCAGATGATTTCCAGTGC
AAGAAAGTTGGCCTGAAGATCGTGGCTAGCCTCGGCGGTGAGCTGGGCAACGTCAAGAAG
GCGGCGGGAATGGACTCCGACTCGCTGGCCAGCTGCGTGTCGAAGCTCTCAGCCGGCGTG
AGCAAGATCAGCGACGTCCTGCAGCTGAACCAGCAGCTGGGCTCGGACGACCGCTGCAAG
AGGTTCCGTGCCTCCATCGGCGAGTTCCTGCAGAAGGCCGAAGCCGAGATCACGGCGGTG
CAGGCCCAGGAGGGGCTCGCCCTCTCCCTCGTCAGGGAGACGACCGAGTTCTTCCACGGC
AACTCTGCCAAGGAGGAAGGCCATCCGCTGAGGATCTTCATGGTGGTGCGCGACTTCCTC
GCCGTCCTCGACCGAGTCTGCAAGGACGTCAGCAGGATGAACGAACGGACGGCGACAACA
GGGGGCTTCAGCACCTCGCGCCGGGTGGAGAGCGCGGCCCTTCCTCCACGATTCAACGCT
GCGGCGCAGTCCAGCAGCAGCTCCGAGGAGGAGAGCTCGTCGTCATCGTCGCAGTAGCCG
TCAGTAGGGCAAGACACCTGAATGTCTCAGCTTGGAATCTGCATCCTAGCTACTGTCTAG
ATGAGCAGGCAATGCGGAGGACCCAACCTGTAATCATCGCTAGTATTTTGTAACTTCAGC
AGATACCCCGATGTCTAGAAGAGCAGCAATGCTTGGAGTAAGTGTAGATCA

Homology of Contig U35_10393 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g34180.1	789	2e-100	protein\|formin, putative, expressed
Brachypodium v1_2	Bradi4g35330.1	774	5e-98
Arabidopsis v10	AT3G25500.1	1051	1e-55	\| Symbols: AFH1, FH1, AHF1, ATFH1 \| formin homology 1 \| chr3:9251320-9254826 REVERSE LENGTH=1051